PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0248s0058.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family MYB
Protein Properties Length: 355aa    MW: 39200.9 Da    PI: 8.2151
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0248s0058.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding52.98.2e-171461148
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                         +g+WT+eEd +lv +++ +G+g+W++++   g+ R+ k+c++rw +yl
  Kalax.0248s0058.1.p 14 KGPWTPEEDIILVSYIQDHGPGNWRLVPTNTGLQRCSKSCRLRWTNYL 61
                         79********************************************97 PP
2Myb_DNA-binding48.22.5e-1567112148
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                          rg++T +E++ ++++ +++G++ W++Ia++++  Rt++++k++w+++l
  Kalax.0248s0058.1.p  67 RGNFTDQEEKMIIHLQALFGNR-WAAIASYLP-QRTDNDIKNYWNTHL 112
                          89********************.*********.************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129424.857965IPR017930Myb domain
SuperFamilySSF466892.7E-3011108IPR009057Homeodomain-like
SMARTSM007171.9E-131363IPR001005SANT/Myb domain
PfamPF002493.0E-151461IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.5E-231568IPR009057Homeodomain-like
CDDcd001672.05E-111661No hitNo description
PROSITE profilePS5129419.81666116IPR017930Myb domain
SMARTSM007172.3E-1566114IPR001005SANT/Myb domain
PfamPF002491.9E-1467112IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.609.1E-2569117IPR009057Homeodomain-like
CDDcd001679.59E-1269112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 355 aa     Download sequence    Send to blast
MGRSPGCDKV GVKKGPWTPE EDIILVSYIQ DHGPGNWRLV PTNTGLQRCS KSCRLRWTNY  60
LRPGIRRGNF TDQEEKMIIH LQALFGNRWA AIASYLPQRT DNDIKNYWNT HLKKKLKMLQ  120
PGKTNNNTNS QDDNSSSSSA SRQTHLKGQW EKRLQTDIHM AKQALCAALS LDKPVYETKT  180
HSPPQPSNLN PLPAPTPTRT AGVTQASSTP AASTYASSAE NIARLLENWS KKKSSFGSDA  240
QMTKIGQNYS LKTEKQQLVG SSSSSDEGAL SSTTPDQLDS IFGNSNVTDL HQDNVMVFQE  300
ESKPLSMEAG QALQMPLTVL EKWLLFDDGC NGITSQGQDD LLDMSLDGNH ALFF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1mse_C1e-24141164105C-Myb DNA-Binding Domain
1msf_C1e-24141164105C-Myb DNA-Binding Domain
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1111117LKKKLKM
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. {ECO:0000305}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023875403.11e-125myb-related protein 306-like
SwissprotP813921e-112MYB06_ANTMA; Myb-related protein 306
TrEMBLA0A2N9J4F31e-128A0A2N9J4F3_FAGSY; Uncharacterized protein
STRINGXP_008239949.11e-123(Prunus mume)
STRINGEMJ104751e-123(Prunus persica)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G62470.22e-91myb domain protein 96
Publications ? help Back to Top
  1. Jackson D,Culianez-Macia F,Prescott AG,Roberts K,Martin C
    Expression patterns of myb genes from Antirrhinum flowers.
    Plant Cell, 1991. 3(2): p. 115-25
    [PMID:1840903]