PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0248s0056.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family TCP
Protein Properties Length: 396aa    MW: 42840.1 Da    PI: 7.3831
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0248s0056.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP131.57.8e-41762212120
                  TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssg.. 88 
                          ++k+ +++++hTkv+gR+RR+R++a+caar+F+L++eLG+++d++tieWLlqqa+pa++++tgt++++a+++  + s +ss+s+ s++  
  Kalax.0248s0056.1.p  76 PPKRNSTKDRHTKVDGRGRRIRMPALCAARVFQLTRELGHKSDGETIEWLLQQAEPAVIAATGTGTIPANFTsLNISLRSSGSSMSIPsq 165
                          789******************************************************************999888888888887777777 PP

                  TCP  89 .........................kaaksaa.kskksqksaasalnlakesrakara 120
                                                   ++++s++    +s++ ++  l + ++++++ r+
  Kalax.0248s0056.1.p 166 lrstyfnpsfsipqqrrtlfpglglSSSTSSTiLDFQSNHGNN--LGILQQTKQELRE 221
                          7777777777788877778888877444444423333333333..4444444444443 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036342.4E-4181242IPR005333Transcription factor, TCP
PROSITE profilePS5136927.92382136IPR017887Transcription factor TCP subgroup
Sequence ? help Back to Top
Protein Sequence    Length: 396 aa     Download sequence    Send to blast
MEGGGDDHHH THNSHHHIFQ RSNNFPFQLL EKKEDDQSAA CSSSGYPPSN SLAIVSSTTT  60
NNNPDPTQPD PTKKPPPKRN STKDRHTKVD GRGRRIRMPA LCAARVFQLT RELGHKSDGE  120
TIEWLLQQAE PAVIAATGTG TIPANFTSLN ISLRSSGSSM SIPSQLRSTY FNPSFSIPQQ  180
RRTLFPGLGL SSSTSSTILD FQSNHGNNLG ILQQTKQELR ETTSSTLDLS EDDSHISRKR  240
RTPEQEMPPS SPPQHQLNNY LLQSTSSGVI PASHGQIPAN IWMLANPNNN QIENPIWTFP  300
PQVSSNNAAA AAAALYRGTM SSGLHFMNFP TPVALLGSGQ HLGPAQGSSG LGPGNNSMNE  360
NHLNIFGGLN PYRSVSGSDN QASGSQSHHE DERHD*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1236241SRKRRT
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved the regulation of plant development. Together with TCP15, modulates plant stature by promoting cell division in young internodes. Represses cell proliferation in leaf and floral tissues (PubMed:21668538). Together with TCP15, acts downstream of gibberellin (GA), and the stratification pathways that promote seed germination. Involved in the control of cell proliferation at the root apical meristem (RAM) by regulating the activity of CYCB1-1 (PubMed:25655823). Involved in the regulation of seed germination. May regulate the activation of embryonic growth potential during seed germination (PubMed:17953649, PubMed:22155632). Acts together with SPY to promote cytokinin responses that affect leaf shape and trichome development in flowers (PubMed:22267487). Transcription factor involved in the regulation of endoreduplication. Represses endoreduplication by activating the gene expression of the key cell-cycle regulators RBR1 and CYCA2-3 (PubMed:25757472). Regulates the expression of the defense gene pathogenesis-related protein 2 (PR2) in antagonism to SRFR1, a negative regulator of effector-triggered immunity (PubMed:24689742). Involved in positive regulation of plant defense. Represses jasmonate (JA) response to promote disease resistance. Regulates the plant immune system by transcriptionally repressing a subset of JA-responsive genes (PubMed:28132837). {ECO:0000269|PubMed:17953649, ECO:0000269|PubMed:21668538, ECO:0000269|PubMed:22155632, ECO:0000269|PubMed:22267487, ECO:0000269|PubMed:24689742, ECO:0000269|PubMed:25655823, ECO:0000269|PubMed:25757472, ECO:0000269|PubMed:28132837}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced during seed imbibition (PubMed:17953649). Circadian-regulation with the lowest expression in the middle of the dark period (PubMed:17953649). {ECO:0000269|PubMed:17953649}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019464078.11e-143PREDICTED: transcription factor TCP14-like
SwissprotQ93Z008e-58TCP14_ARATH; Transcription factor TCP14
TrEMBLA0A2R6PE211e-142A0A2R6PE21_ACTCH; Transcription factor like
STRINGVIT_17s0000g06020.t011e-136(Vitis vinifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69690.16e-41TCP family protein
Publications ? help Back to Top
  1. Steiner E, et al.
    The Putative O-Linked N-Acetylglucosamine Transferase SPINDLY Inhibits Class I TCP Proteolysis to Promote Sensitivity to Cytokinin.
    Plant Physiol., 2016. 171(2): p. 1485-94
    [PMID:27208284]
  2. Yang L, et al.
    Pseudomonas syringae Type III Effector HopBB1 Promotes Host Transcriptional Repressor Degradation to Regulate Phytohormone Responses and Virulence.
    Cell Host Microbe, 2017. 21(2): p. 156-168
    [PMID:28132837]
  3. Zhang N, et al.
    MOS1 functions closely with TCP transcription factors to modulate immunity and cell cycle in Arabidopsis.
    Plant J., 2018. 93(1): p. 66-78
    [PMID:29086441]
  4. Mazur MJ, et al.
    Arabidopsis TCP Transcription Factors Interact with the SUMO Conjugating Machinery in Nuclear Foci.
    Front Plant Sci, 2017. 8: p. 2043
    [PMID:29250092]