PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Kalax.0246s0008.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
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Family | SRS | ||||||||
Protein Properties | Length: 358aa MW: 39395.3 Da PI: 7.8426 | ||||||||
Description | SRS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF702 | 193.3 | 8.2e-60 | 136 | 289 | 3 | 154 |
DUF702 3 sgtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasaaeaaskrkrelkskkqsalsstkls 92 g+++CqdCGnqakkdC h RCRtCCksrgf+C+th+kstWvpa+krrerqqqla+++++++++ + +++ + ++ + l++t++s Kalax.0246s0008.1.p 136 GGGMNCQDCGNQAKKDCPHLRCRTCCKSRGFQCQTHIKSTWVPASKRRERQQQLASLQQQQSQQLQLRSHDITL---KRPRGELTTTNTS 222 5789****************************************************988876654332222221...2233333333322 PP DUF702 93 saeskkele.tsslPeevsseavfrcvrvssvd..........dgeeelaYqtavsigGhvfkGiLydqGlee 154 l+ + +P+ev+s+avfrcvrvss+d ++++aYq+avsigGhvfkGiLydqG+e+ Kalax.0246s0008.1.p 223 ------GLDlSNIFPSEVNSQAVFRCVRVSSMDpehnaneehgHHDDQFAYQAAVSIGGHVFKGILYDQGPES 289 ......2330345*******************8544443322123689***********************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF05142 | 2.7E-60 | 138 | 288 | IPR007818 | Protein of unknown function DUF702 |
TIGRFAMs | TIGR01623 | 2.5E-26 | 140 | 182 | IPR006510 | Zinc finger, lateral root primordium type 1 |
TIGRFAMs | TIGR01624 | 1.1E-20 | 230 | 287 | IPR006511 | Lateral Root Primordium type 1, C-terminal |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0048467 | Biological Process | gynoecium development |
Sequence ? help Back to Top |
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Protein Sequence Length: 358 aa Download sequence Send to blast |
MAGFFSSLSG GVRDEQEEEH DQQQPPPAAA NSLFLYRSEE IYKQQQGLEI WQQQQFYRQQ 60 QLQQQQQQQQ QQYLPRDQHH HHHHIISYAA AAAPPPSLMG PTSSRRLSFN VSSDASSSRS 120 GGGGFTVMRG SGSGSGGGMN CQDCGNQAKK DCPHLRCRTC CKSRGFQCQT HIKSTWVPAS 180 KRRERQQQLA SLQQQQSQQL QLRSHDITLK RPRGELTTTN TSGLDLSNIF PSEVNSQAVF 240 RCVRVSSMDP EHNANEEHGH HDDQFAYQAA VSIGGHVFKG ILYDQGPESR YGESSSGGSG 300 AYQQPQQQLN LITSGAATTP ATSSPVVTTQ LLDASLNYPT PINAFMAGTQ FFPPSRS* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_022856966.1 | 4e-94 | protein SHI RELATED SEQUENCE 1-like | ||||
TrEMBL | A0A061DFV6 | 1e-85 | A0A061DFV6_THECC; Lateral root primordium protein-related, putative | ||||
STRING | EOX90942 | 2e-86 | (Theobroma cacao) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G66350.1 | 4e-48 | Lateral root primordium (LRP) protein-related |
Link Out ? help Back to Top | |
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Phytozome | Kalax.0246s0008.1.p |