PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0244s0049.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family WRKY
Protein Properties Length: 344aa    MW: 37444.8 Da    PI: 7.1603
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0244s0049.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY96.61.7e-30152210259
                          --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
                 WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                          +D ++WrKYGqK++kgs++pr+YY+C+s+  C ++k+ver+++dp+++++tY+ +Hnh+
  Kalax.0244s0049.1.p 152 SDIWSWRKYGQKPIKGSPYPRGYYKCSSSkACLARKQVERNRTDPTMFIVTYTADHNHP 210
                          79*************************9989***************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.805.3E-30138212IPR003657WRKY domain
PROSITE profilePS5081133.752146212IPR003657WRKY domain
SuperFamilySSF1182906.02E-25149212IPR003657WRKY domain
SMARTSM007743.8E-34151211IPR003657WRKY domain
PfamPF031068.8E-25153210IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010150Biological Processleaf senescence
GO:0010200Biological Processresponse to chitin
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 344 aa     Download sequence    Send to blast
MEPDWDLHAV VRGFAAINKT APSAVAAPTT AAPLFSSTRD VDDQKHHVFC PTNLAAPDQL  60
HELYSPYLLN PPARTQSVQP TISSYFVALE ASKKRTQQQQ QQQLLGTIST TSPAKTITPS  120
VPAPHSQTSH KPKRRKSQQK KVCHVPAEAL SSDIWSWRKY GQKPIKGSPY PRGYYKCSSS  180
KACLARKQVE RNRTDPTMFI VTYTADHNHP APTHKNSLAG TTRNTNPLSS PSSTAHDDTN  240
LHISKPCSSS SMGTMSPTAS LGDEVLQLTD KMESKSADIG GEDISRTNFV DDVMGFLDMD  300
VTDDFFEDLD EIAGPPMDGC SPDHVLPSFP CLANSSSTKS NMD*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5w3x_B4e-21136213280Disease resistance protein RRS1
5w3x_D4e-21136213280Disease resistance protein RRS1
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00422DAPTransfer from AT4G01250Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G01250.19e-67WRKY family protein