PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0242s0029.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family MYB
Protein Properties Length: 335aa    MW: 37568.5 Da    PI: 4.8782
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0242s0029.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding49.78.6e-161461148
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                         +grWT eEd +l ++ +  G g+W+++++  g++R++k+c++rw +yl
  Kalax.0242s0029.1.p 14 KGRWTDEEDAILTRYLQANGEGSWRSVPKNAGLKRCGKSCRLRWINYL 61
                         79********************************************97 PP
2Myb_DNA-binding51.13.2e-1667112148
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                          rg+ T+eE++ ++++++ +G++ W++Ia +++ gRt++++k++w+++l
  Kalax.0242s0029.1.p  67 RGNITPEEEDVIIRLHASMGNR-WSLIAGHLP-GRTDNEIKNYWNSHL 112
                          7999******************.*********.************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.603.7E-23564IPR009057Homeodomain-like
PROSITE profilePS5129417.557961IPR017930Myb domain
SuperFamilySSF466893.59E-2911108IPR009057Homeodomain-like
SMARTSM007174.6E-131363IPR001005SANT/Myb domain
PfamPF002493.0E-141461IPR001005SANT/Myb domain
CDDcd001673.73E-81661No hitNo description
PROSITE profilePS5129426.9162116IPR017930Myb domain
Gene3DG3DSA:1.10.10.604.4E-2765116IPR009057Homeodomain-like
SMARTSM007176.2E-1666114IPR001005SANT/Myb domain
PfamPF002491.8E-1467112IPR001005SANT/Myb domain
CDDcd001671.93E-1071112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 335 aa     Download sequence    Send to blast
MVRAPCCEKE GLKKGRWTDE EDAILTRYLQ ANGEGSWRSV PKNAGLKRCG KSCRLRWINY  60
LRPDLKRGNI TPEEEDVIIR LHASMGNRWS LIAGHLPGRT DNEIKNYWNS HLSRKLLTYS  120
TPSKSKATEP IGSAEVTAEW KPRRGRSRHW SSNKNAPVPS DDADLLRSMV ENGELEPITK  180
EKTIEADADE ESFEITEYIN EEGEDNTSSL NADESLIFSS ARGPSYFNEE QSEIFCSFDD  240
ALNIKAEETD VGVSSHSLNA SSVDQKDGFK FSKKVDTVAG KWNENKGLSL SSAGDARADW  300
DWKGLINGHK LIDEDEMLSM LWDDGSNFKS NNQL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C5e-241211625128MYB TRANSFORMING PROTEIN
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47460.15e-71myb domain protein 12