PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0238s0018.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family WRKY
Protein Properties Length: 338aa    MW: 36664.9 Da    PI: 7.5753
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0238s0018.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY86.62.2e-27168228259
                          --SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS
                 WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 
                          +Dg++WrKYGqKe+ gs+fpr+Y+rCt++   +Cp+kk+v+r ++dp+++++tY+++H ++
  Kalax.0238s0018.1.p 168 EDGFTWRKYGQKEILGSRFPRAYFRCTHQklyHCPAKKQVQRLDDDPDTFQVTYRSDHICH 228
                          7****************************9999*************************885 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.1E-25163228IPR003657WRKY domain
SuperFamilySSF1182906.15E-24165229IPR003657WRKY domain
SMARTSM007742.0E-34167229IPR003657WRKY domain
PfamPF031062.8E-24168228IPR003657WRKY domain
PROSITE profilePS5081119.646168230IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 338 aa     Download sequence    Send to blast
MDDAVISMIL RGCELARRLE ASLPSIAVAS LTESCGEIIS AFAAAREKLS GYQQASAFDN  60
REEWLMRSGY GRGIIMDQHV MVQSHDGERD LHVNMEVGQG ASRVPDQAAA VAGPSVSRAA  120
VGGSGSFQAG QHVSRSSTSR PRRNERRDGR RTVRVAAPRI GNTEIPPEDG FTWRKYGQKE  180
ILGSRFPRAY FRCTHQKLYH CPAKKQVQRL DDDPDTFQVT YRSDHICHIS ATAPGPPPNS  240
SLALPPAISQ QQHSIAPTAS ARAAWLSMGI GCGGSRPTSD PGAHSYDGYS YQPVIDMADT  300
MFNSGSSGTP CMDQIFSSAV EDVEWDQDGD LKGKKHR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A9e-19168227968OsWRKY45
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40740.12e-50WRKY DNA-binding protein 55