PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0237s0048.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family GATA
Protein Properties Length: 357aa    MW: 38255.1 Da    PI: 7.5496
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0237s0048.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA511.9e-16259292134
                 GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 
                          C +C  tkTp+WR gp g+ktLCnaCG+++++ +
  Kalax.0237s0048.1.p 259 CLHCEITKTPQWRAGPMGPKTLCNACGVRHKSGR 292
                          99*****************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0169925.3E-693333IPR016679Transcription factor, GATA, plant
SMARTSM004013.6E-15253303IPR000679Zinc finger, GATA-type
PROSITE profilePS5011411.266253289IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.102.6E-14257290IPR013088Zinc finger, NHR/GATA-type
SuperFamilySSF577162.99E-14257316No hitNo description
CDDcd002023.76E-13258305No hitNo description
PROSITE patternPS003440259284IPR000679Zinc finger, GATA-type
PfamPF003204.0E-14259292IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 357 aa     Download sequence    Send to blast
MSADPTSLVV EDLDCNSFFG HIEDLLDFPE VNNKNSHNAP LVAPGLAWNA PPYSFFNPDS  60
LFIGKGSACT QDLAAELSIP YEDIVQMEWL STFVEDSFSG GDGMTLDKKS FPSTKEASAD  120
AAVAPVQFLS SSPISVLESS SSSSCSEGSK VLLISPDSAR VRGGCGRPRS KRPRPHTFKP  180
RSAMQLIPPA QSFTDTPQLS ASHGAFQGNS FKQSPHLTTE QNKKRKMKPS SSPATPAAEM  240
SNNETGGADP QSQAGVRKCL HCEITKTPQW RAGPMGPKTL CNACGVRHKS GRLFPEYRPA  300
ASPTFVPSLH SNSHKKVLEM RTATVHTPAT TPPGGKMGSD THPELIPNEK AILEYM*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1170174KRPRP
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017236122.14e-92PREDICTED: GATA transcription factor 8-like
RefseqXP_017236123.14e-92PREDICTED: GATA transcription factor 8-like
TrEMBLA0A166DRT19e-91A0A166DRT1_DAUCS; GATA transcription factor
STRINGGLYMA02G08145.23e-90(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54810.21e-38GATA family protein