PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0237s0005.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family GRAS
Protein Properties Length: 509aa    MW: 57311.8 Da    PI: 6.6155
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0237s0005.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS286.38.5e-881215023374
                 GRAS   3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilk 92 
                          +lL++cA+a+s++d +++++lL+ l+elasp+gd  q+la++f++ L  + ++s+++ y++l + ++++++ +++ +    f+evsP+ +
  Kalax.0237s0005.1.p 121 RLLMDCARAISQKDSSKIHHLLWMLNELASPYGDCEQKLASCFLQVLFCKATESGQRSYRTLMSVAEKTYSFDSARKLILKFQEVSPWTT 210
                          79************************************************************9999987766666666666********* PP

                 GRAS  93 fshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRp.egppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvl 181
                          f+h++ N  Ilea++ge+++HiiD++ + ++QWp+Ll+aLa+++ +++p+l++T+v+  ++  k  ++ + +r++kfA+ +gvpfef+++
  Kalax.0237s0005.1.p 211 FGHVASNGSILEALDGESKLHIIDMSNTLCTQWPTLLEALATKNaQETPHLKLTVVVT-DKMVKPVMKDVSQRMEKFARLMGVPFEFKAI 299
                          *****************************************9998999*********9.6789**************************9 PP

                 GRAS 182 .vakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadh..nsesFlerflealeyysalf 268
                             + l +l+ ++L +k gEa+aVn+  +l r       + + r ++++++ sl+Pkvv++ve+ead   ++++F++ f e+l+++   f
  Kalax.0237s0005.1.p 300 tELNCLGELTKDQLGIKDGEAVAVNCNGALRRAD-----VGK-RGSMIDMIGSLQPKVVTIVEEEADFtsTRGDFVKCFEECLNFFILYF 383
                          4455999***********************9996.....333.778*******************999545669**************** PP

                 GRAS 269 dsleaklpreseerikvErellgreivnvvacegae......rrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrve 352
                          ++le+++ ++s+er ++Ere  +r+iv +++c  ++      + er+e+ ++W++rl+ a ++p+++s+++ +++k+ll+++   g++++
  Kalax.0237s0005.1.p 384 ETLEESFIPTSNERLMLERE-CSRHIVGILSCDDDDeiadhgKCERRERGAQWSKRLR-ASLGPITFSDDVIDDVKALLKRYR-TGWNLK 470
                          ********************.89*********987623223356899999******96.67**********************.555555 PP

                 GRAS 353 ..ee........sgslvlgWkdrpLvsvSaWr 374
                            ++         + ++l Wk++pLv++SaW+
  Kalax.0237s0005.1.p 471 vsQKssdvdetsPAGIYLLWKEQPLVWASAWK 502
                          33334555555345566**************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098540.98893473IPR005202Transcription factor GRAS
PfamPF035142.9E-85121502IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 509 aa     Download sequence    Send to blast
MMRLMMRRVK SGDDVLDFYY VYGLEEEYEY SKCSIRSFLT GLYPSQVYRA AICEPSLKPR  60
DRGVIPISKR PQTSSYGSML LDTTLAGGLQ SLAMQNNNGQ LPGRSLEFSI EPCDTGKWAA  120
RLLMDCARAI SQKDSSKIHH LLWMLNELAS PYGDCEQKLA SCFLQVLFCK ATESGQRSYR  180
TLMSVAEKTY SFDSARKLIL KFQEVSPWTT FGHVASNGSI LEALDGESKL HIIDMSNTLC  240
TQWPTLLEAL ATKNAQETPH LKLTVVVTDK MVKPVMKDVS QRMEKFARLM GVPFEFKAIT  300
ELNCLGELTK DQLGIKDGEA VAVNCNGALR RADVGKRGSM IDMIGSLQPK VVTIVEEEAD  360
FTSTRGDFVK CFEECLNFFI LYFETLEESF IPTSNERLML ERECSRHIVG ILSCDDDDEI  420
ADHGKCERRE RGAQWSKRLR ASLGPITFSD DVIDDVKALL KRYRTGWNLK VSQKSSDVDE  480
TSPAGIYLLW KEQPLVWASA WKSQPAKK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_B1e-13010550277473Protein SHORT-ROOT
5b3h_B1e-13110550223419Protein SHORT-ROOT
5b3h_E1e-13110550223419Protein SHORT-ROOT
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor required for the asymmetric cell division involved in radial pattern formation in roots. Essential for both cell division and cell specification (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022760991.10.0protein SHORT-ROOT-like
SwissprotA2YN561e-133SHR1_ORYSI; Protein SHORT-ROOT 1
TrEMBLB9HGY90.0B9HGY9_POPTR; Uncharacterized protein
STRINGPOPTR_0007s01650.10.0(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37650.11e-133GRAS family protein