PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Kalax.0236s0019.1.p

Organism

Kalanchoe marnieriana

Taxonomic ID

80907

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe

Family

bHLH

Protein Properties

Length: 371aa MW: 41167.6 Da PI: 7.1576

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Kalax.0236s0019.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	46.1	9e-15	165	216	1	55
CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +r++h ++Er+RR+++ + + Lr llP+a +++K + a+i+ A++YIk+L+ Kalax.0236s0019.1.p 165 QRMTHIAIERNRRRQMSEYLGVLRPLLPPA---YAQKGDQASIVGGAIDYIKKLE 216 79**************************...*****************996 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00083	7.37E-12	162	220	No hit	No description
SuperFamily	SSF47459	1.19E-17	163	232	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	15.663	164	215	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	2.8E-14	165	231	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	6.7E-12	165	216	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	5.5E-10	170	221	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 371 aa Download sequence Send to blast
MEEQEEGCGG RGPINLTSSS VDCREELGLC VECLVGPSAS TDSLSASLGL GDRMPFLRML 60 QTLDPSNLQS PSRKYKPKAE NQVLEVDSCL THDMPDLHSP VMSEGKNPTR ACPDGILEEK 120 GELDSVNECR QNSCSEKQAL LSCGRKRKPK RTKEVVENKM DKEKQRMTHI AIERNRRRQM 180 SEYLGVLRPL LPPAYAQKGD QASIVGGAID YIKKLEQLLQ SLQAQKRQRK MEDEMRRSSN 240 SIPTPPETSD ALSTSTSSPS ASLDENSLEH GKKADVNIRV VQTHVNLHIE CNNVKQSQLI 300 KLLIALEELG LTILHLNITS THKSSFYSLS LKVEEESKVR SAEEVSASIE KVLNSINIYD 360 GRRSSVRNQN *

Sequence ? help Back to Top

Protein Sequence Length: 371 aa Download sequence Send to blast

MEEQEEGCGG RGPINLTSSS VDCREELGLC VECLVGPSAS TDSLSASLGL GDRMPFLRML  60
QTLDPSNLQS PSRKYKPKAE NQVLEVDSCL THDMPDLHSP VMSEGKNPTR ACPDGILEEK  120
GELDSVNECR QNSCSEKQAL LSCGRKRKPK RTKEVVENKM DKEKQRMTHI AIERNRRRQM  180
SEYLGVLRPL LPPAYAQKGD QASIVGGAID YIKKLEQLLQ SLQAQKRQRK MEDEMRRSSN  240
SIPTPPETSD ALSTSTSSPS ASLDENSLEH GKKADVNIRV VQTHVNLHIE CNNVKQSQLI  300
KLLIALEELG LTILHLNITS THKSSFYSLS LKVEEESKVR SAEEVSASIE KVLNSINIYD  360
GRRSSVRNQN *

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	165	176	RMTHIAIERNRR

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G46810.1	3e-51	bHLH family protein

Link Out ? help Back to Top
Phytozome	Kalax.0236s0019.1.p