PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0234s0009.2.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family bHLH
Protein Properties Length: 346aa    MW: 37901.5 Da    PI: 8.3398
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0234s0009.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH27.26.8e-09181228455
                          HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-.STCHHHHHHHHHHHHHHH CS
                  HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskK.lsKaeiLekAveYIksLq 55 
                          +h+ +Er RR+ri +++  L+ l+P +     +K   Ka +L + ++Y++sLq
  Kalax.0234s0009.2.p 181 SHSLAERVRRERISERMKMLQALVPGC-----EKvTGKALMLDEIINYVQSLQ 228
                          8*************************9.....67699***************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474592.36E-16175243IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.78E-10175232No hitNo description
Gene3DG3DSA:4.10.280.101.3E-15177240IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.383177227IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.8E-6181228IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.7E-9183233IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009739Biological Processresponse to gibberellin
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 346 aa     Download sequence    Send to blast
MAAHSYQPHH FLLSSTFFPS TPFDMSGFVN EGNISSKDSN SGAIIAFAND MAASSPMGQV  60
LHEGLSDAGV ILSSKTMHSA TVSSIDVEKA EVIGEQVTQN KHMRCSDHKE KNKKKTRRGS  120
SSINNSTQGK AKKQKKSEDG QNVVEEQKPN KVSKKRQMDG SEDTQKDYIH VRARRGQATD  180
SHSLAERVRR ERISERMKML QALVPGCEKV TGKALMLDEI INYVQSLQNQ IEFLSMKLAS  240
FNPIYSNFAM DLDAALLRQE RLSRLLAAAS QPGGSAQQYS PTAVNYNNSS TTSLSGPAVG  300
CHHHSLIETS LLLQQEAADS LSWDQMDTQT QNLMNQFGLG NAMCS*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021286178.15e-85transcription factor bHLH137
RefseqXP_021286179.15e-85transcription factor bHLH137
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G50915.24e-54bHLH family protein