PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0232s0005.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family B3
Protein Properties Length: 302aa    MW: 33068.8 Da    PI: 4.9224
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0232s0005.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B335.91.3e-111995285
                         EEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE- CS
                   B3  2 fkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld 85
                         +k + ps+ +    l+l+ kf+ eh   ++e+ +++lede+g+  + k+   kk     l++GW++F  a++L  gD+ vF+l+
  Kalax.0232s0005.1.p 19 VKFMHPSSCSGGFSLSLSIKFC-EHL--PPEDCEVVLEDEEGQLTRTKYLAVKKA----LSAGWRGFSIAHQLLPGDVAVFQLV 95
                         57888999999999********.553..235569***************655555....9**********************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.6E-111396IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019365.1E-141398IPR015300DNA-binding pseudobarrel domain
CDDcd100174.10E-151695No hitNo description
SMARTSM010191.6E-518102IPR003340B3 DNA binding domain
PfamPF023623.7E-91996IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 302 aa     Download sequence    Send to blast
MVRAESIRAG LRPDLPSLVK FMHPSSCSGG FSLSLSIKFC EHLPPEDCEV VLEDEEGQLT  60
RTKYLAVKKA LSAGWRGFSI AHQLLPGDVA VFQLVAPCRM KEADRPPGLA MVVYKEDKQG  120
NGSADVTTDE CFNCSPAGSE TIDGIRFSES NITFKEVTSF QDFHIAFNGL IIDCEFSPDT  180
RLKYYELCKT RSMFLHEHLL EGINCKLAAG IIIETVNIAD AVQAAGPSTP EEDVAVWNKT  240
LEAVGGLGMS VEFLRERLSC RVGRVSEADK RGDALQVKLL EVQEAAIKFH AEIEALRRVD  300
G*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021832667.11e-78B3 domain-containing protein Os01g0234100-like isoform X2
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19184.11e-15B3 family protein