PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Kalax.0227s0005.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
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Family | WRKY | ||||||||
Protein Properties | Length: 357aa MW: 40248.6 Da PI: 5.1143 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 91.6 | 6.1e-29 | 137 | 196 | 2 | 58 |
--SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnh 58 dDg++WrKYGqK++ g+++prsYYrCt + +C+++k+v+rs+edp+v+eitY+g+H++ Kalax.0227s0005.1.p 137 DDGFSWRKYGQKDILGARYPRSYYRCTNRnikHCWATKQVQRSDEDPTVFEITYKGKHTC 196 8**************************998889*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50811 | 21.39 | 131 | 194 | IPR003657 | WRKY domain |
Gene3D | G3DSA:2.20.25.80 | 1.3E-27 | 133 | 196 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 8.5E-25 | 135 | 196 | IPR003657 | WRKY domain |
SMART | SM00774 | 6.9E-38 | 136 | 198 | IPR003657 | WRKY domain |
Pfam | PF03106 | 3.1E-26 | 137 | 196 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 357 aa Download sequence Send to blast |
MENWEQQTLI NELTQGMELA KQLRFHVGPS STTETREYLV QKILSSYDKA LLILNWSESA 60 SNGQGRRPQP NVAPNLLPES PCSFDGSPRS EPCDKGVKDQ FQQQEHLTDL SKKRKPQAKW 120 TDHVRIYCES GLEGPHDDGF SWRKYGQKDI LGARYPRSYY RCTNRNIKHC WATKQVQRSD 180 EDPTVFEITY KGKHTCLPEC DPNLEPTQQD GEVQGLNNNV NDHKQSQADD FLQNLKNNLK 240 VNTEDMSNKE MPCHLPLTSA STEITMNGNY SPANFDGSLM QIFTSPAMSA SNSLPVSPFR 300 QYSSFGRGFG TVCCSESDRS DMFSSNANSP YLDLDFTPDP ADPDLTFPFN VPGFFP* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6ir8_A | 3e-17 | 137 | 196 | 9 | 68 | OsWRKY45 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011026911.1 | 1e-104 | PREDICTED: probable WRKY transcription factor 41 | ||||
Swissprot | Q8H0Y8 | 1e-62 | WRK41_ARATH; Probable WRKY transcription factor 41 | ||||
TrEMBL | A0A3R5WE40 | 1e-109 | A0A3R5WE40_PAELC; WRKY protein | ||||
STRING | POPTR_0003s13840.1 | 1e-100 | (Populus trichocarpa) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G11070.1 | 5e-65 | WRKY family protein |
Link Out ? help Back to Top | |
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Phytozome | Kalax.0227s0005.1.p |
Publications ? help Back to Top | |||
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