PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0223s0043.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family NAC
Protein Properties Length: 553aa    MW: 61471.4 Da    PI: 5.0033
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0223s0043.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM162.21.9e-50111372128
                  NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkd 89 
                          +pGfrFhPtdeelv++yLk+kv g+ +++ ++i+e+d+yk+ePwdLp k ++k++++ewyfFs  dkky +g+++nrat++gyWk+tgk 
  Kalax.0223s0043.1.p  11 APGFRFHPTDEELVKFYLKRKVCGRAFRF-HAIAEADVYKCEPWDLPdKsALKSRDSEWYFFSGLDKKYGHGSKTNRATERGYWKTTGKG 99 
                          69*************************99.88**************96347788999********************************* PP

                  NAM  90 kevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                          ++v++ k   vg+kktLv++ grap+ge+t+Wvmheyrl
  Kalax.0223s0043.1.p 100 RPVHN-KLVIVGMKKTLVYHIGRAPRGERTNWVMHEYRL 137
                          ****9.9999***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100555.08410160IPR003441NAC domain
SuperFamilySSF1019411.23E-5810160IPR003441NAC domain
PfamPF023654.2E-2712137IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 553 aa     Download sequence    Send to blast
MGGRDPANLI APGFRFHPTD EELVKFYLKR KVCGRAFRFH AIAEADVYKC EPWDLPDKSA  60
LKSRDSEWYF FSGLDKKYGH GSKTNRATER GYWKTTGKGR PVHNKLVIVG MKKTLVYHIG  120
RAPRGERTNW VMHEYRLADS EVEKAGVAQA SFVVCKIFQK SGPGPKNGEQ HGAPFIEEEW  180
EDEEEVLVTG EQAQAEALIA DGAYIETNDL DQLIDFNVSP GNYLPQTNYY HGDSSNQNED  240
SREFYEDGQK PFVGALENHY DSKLQVSEQQ GFDELKPYDV EGKLPVVEYS AKLDEIASHD  300
VNYLLDEPYF DGFGEEVHNE GLYLETDDLL NPIEADPSTF DMLHEYLADF NANDEIFYTP  360
PNNSTVAAET NFPLDIVHKH AKGEKQKMAM ASEQFANAPD GEVVSSSNQN RTKFNSGSKN  420
PIVKHANRMV ESIPAPPAFA AEFPAKEAAI RLASAMETQN SVNVTANMIH GRNTSSINNG  480
LSWSFDKNGK GQLIFSLSVG QGDGHLNSAA SLHGYLSSKT SSAATLCGLY LILFWVSILF  540
ISMKFGTCAY AK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A3e-431016015168Stress-induced transcription factor NAC1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028124170.11e-176NAC domain-containing protein 78-like
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G04410.11e-115NAC domain containing protein 2