PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Kalax.0218s0031.3.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
|
||||||||
Family | GRAS | ||||||||
Protein Properties | Length: 513aa MW: 57182.5 Da PI: 4.6123 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 105 | 1e-32 | 147 | 511 | 2 | 373 |
GRAS 2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPil 91 +lL + Aea + +++el + + +se ++p g++++R +yf + ++ a l +++s +++ a+k+f+++ P+ Kalax.0218s0031.3.p 147 LHLLKAHAEATDREQTELSEVIQRCISEKVNPFGETLERFSFYFFRSNDQQYAY--------L--RQES---QKNFEPAFKAFYQILPLG 223 6899999*************************************9876555554........3..3333...4567779999******** PP GRAS 92 kfshltaNqaIleavege.ervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg.....skeeleetgerLakfAeelgvp 175 +f+hl+ N+aIl a+ + e++ ++Dfd+++G+QW++ l++L + l +T ++ + + + e+t++rL A+++gv+ Kalax.0218s0031.3.p 224 RFAHLASNSAILAAMPADtETLNVVDFDVGEGIQWAPVLETLGRE---KKALSLTCIKWEGDCptsapLHWNFESTQRRLICHATSVGVN 310 ***************9887999********************964...4579999999855447666778899***************** PP GRAS 176 fefnvlvakrledleleeLrvkp..gEalaVnlvlqlhrlldesvsleserdevLklvkslsPk.......vvvvveqe...adhnsesF 253 ++ + + ++ dl ++e++ + ++ la n+++ l ++ ++ +++ +e+L++ k++ ++ ++++ e e + ++++ Kalax.0218s0031.3.p 311 LKVQEV---EMGDL-VSEIAKSAgrRDWLAFNCQVGLPHMA--RARNHERVTEFLRIAKHVTADsttggggIITLGEGEvfkRRTKDSDY 394 ****97...77788.67776655569**************8..55556668**********98655666669*******542244889** PP GRAS 254 lerflealeyysalfdsleaklpres.eerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllr 342 + f+e l + al+ +le ++p + e+++++E +++++i++ ++ + +++ + + G++ ++ls++ +ak l++ Kalax.0218s0031.3.p 395 STFFMERLAHSQALLQALEWSFPDQLaEAKMTMECLFMSPNISSPEWLQQWK------YVKQQGDDQADIGLEGLKLSQSSLLEAKGLIA 478 ***********************9877999***********98755544444......445555677899*******************9 PP GRAS 343 kvk.sdgyrve.eesgslvlgWkdrpLvsvSaW 373 + s g r ++++++vl W + pLv vS W Kalax.0218s0031.3.p 479 PGEhSFGVRKGgKNENEIVLEWGGTPLVRVSTW 511 9884455444468899***************** PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 16.086 | 120 | 490 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 3.5E-30 | 147 | 511 | IPR005202 | Transcription factor GRAS |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 513 aa Download sequence Send to blast |
MKRAQPLDPL LPFYYMGAAQ SGAETTFLHI NSPFAGSVIV DGESEIFSSS GDSPQAQMWC 60 YKDLEFGLLA EGKIYMEDGE LELFDGGEIS MLWDDCVGSF NPERSAVSSP YSIVNTRDCS 120 VESTSPIRSS VTCLKDDMDI DDQLSLLHLL KAHAEATDRE QTELSEVIQR CISEKVNPFG 180 ETLERFSFYF FRSNDQQYAY LRQESQKNFE PAFKAFYQIL PLGRFAHLAS NSAILAAMPA 240 DTETLNVVDF DVGEGIQWAP VLETLGREKK ALSLTCIKWE GDCPTSAPLH WNFESTQRRL 300 ICHATSVGVN LKVQEVEMGD LVSEIAKSAG RRDWLAFNCQ VGLPHMARAR NHERVTEFLR 360 IAKHVTADST TGGGGIITLG EGEVFKRRTK DSDYSTFFME RLAHSQALLQ ALEWSFPDQL 420 AEAKMTMECL FMSPNISSPE WLQQWKYVKQ QGDDQADIGL EGLKLSQSSL LEAKGLIAPG 480 EHSFGVRKGG KNENEIVLEW GGTPLVRVST WI* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_010653403.1 | 1e-132 | PREDICTED: nodulation-signaling pathway 2 protein | ||||
TrEMBL | A0A438GC47 | 1e-133 | A0A438GC47_VITVI; Nodulation-signaling pathway 2 protein |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G08250.1 | 1e-13 | GRAS family protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | Kalax.0218s0031.3.p |