PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Kalax.0218s0031.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
|
||||||||
Family | GRAS | ||||||||
Protein Properties | Length: 530aa MW: 59348.4 Da PI: 4.8695 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 104.9 | 1.1e-32 | 164 | 528 | 2 | 373 |
GRAS 2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPil 91 +lL + Aea + +++el + + +se ++p g++++R +yf + ++ a l +++s +++ a+k+f+++ P+ Kalax.0218s0031.1.p 164 LHLLKAHAEATDREQTELSEVIQRCISEKVNPFGETLERFSFYFFRSNDQQYAY--------L--RQES---QKNFEPAFKAFYQILPLG 240 6899999*************************************9876555554........3..3333...4567779999******** PP GRAS 92 kfshltaNqaIleavege.ervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg.....skeeleetgerLakfAeelgvp 175 +f+hl+ N+aIl a+ + e++ ++Dfd+++G+QW++ l++L + l +T ++ + + + e+t++rL A+++gv+ Kalax.0218s0031.1.p 241 RFAHLASNSAILAAMPADtETLNVVDFDVGEGIQWAPVLETLGRE---KKALSLTCIKWEGDCptsapLHWNFESTQRRLICHATSVGVN 327 ***************9887999********************964...4579999999855447666778899***************** PP GRAS 176 fefnvlvakrledleleeLrvkp..gEalaVnlvlqlhrlldesvsleserdevLklvkslsPk.......vvvvveqe...adhnsesF 253 ++ + + ++ dl ++e++ + ++ la n+++ l ++ ++ +++ +e+L++ k++ ++ ++++ e e + ++++ Kalax.0218s0031.1.p 328 LKVQEV---EMGDL-VSEIAKSAgrRDWLAFNCQVGLPHMA--RARNHERVTEFLRIAKHVTADsttggggIITLGEGEvfkRRTKDSDY 411 ****97...77788.67776655569**************8..55556668**********98655666669*******542244889** PP GRAS 254 lerflealeyysalfdsleaklpres.eerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllr 342 + f+e l + al+ +le ++p + e+++++E +++++i++ ++ + +++ + + G++ ++ls++ +ak l++ Kalax.0218s0031.1.p 412 STFFMERLAHSQALLQALEWSFPDQLaEAKMTMECLFMSPNISSPEWLQQWK------YVKQQGDDQADIGLEGLKLSQSSLLEAKGLIA 495 ***********************9877999***********98755544444......445555677899*******************9 PP GRAS 343 kvk.sdgyrve.eesgslvlgWkdrpLvsvSaW 373 + s g r ++++++vl W + pLv vS W Kalax.0218s0031.1.p 496 PGEhSFGVRKGgKNENEIVLEWGGTPLVRVSTW 528 9884455444468899***************** PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 16.086 | 137 | 507 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 3.9E-30 | 164 | 528 | IPR005202 | Transcription factor GRAS |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 530 aa Download sequence Send to blast |
MRLMMKMLLC TRFPRKKMKR AQPLDPLLPF YYMGAAQSGA ETTFLHINSP FAGSVIVDGE 60 SEIFSSSGDS PQAQMWCYKD LEFGLLAEGK IYMEDGELEL FDGGEISMLW DDCVGSFNPE 120 RSAVSSPYSI VNTRDCSVES TSPIRSSVTC LKDDMDIDDQ LSLLHLLKAH AEATDREQTE 180 LSEVIQRCIS EKVNPFGETL ERFSFYFFRS NDQQYAYLRQ ESQKNFEPAF KAFYQILPLG 240 RFAHLASNSA ILAAMPADTE TLNVVDFDVG EGIQWAPVLE TLGREKKALS LTCIKWEGDC 300 PTSAPLHWNF ESTQRRLICH ATSVGVNLKV QEVEMGDLVS EIAKSAGRRD WLAFNCQVGL 360 PHMARARNHE RVTEFLRIAK HVTADSTTGG GGIITLGEGE VFKRRTKDSD YSTFFMERLA 420 HSQALLQALE WSFPDQLAEA KMTMECLFMS PNISSPEWLQ QWKYVKQQGD DQADIGLEGL 480 KLSQSSLLEA KGLIAPGEHS FGVRKGGKNE NEIVLEWGGT PLVRVSTWI* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
TrEMBL | A0A438GC47 | 1e-132 | A0A438GC47_VITVI; Nodulation-signaling pathway 2 protein |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G08250.1 | 2e-13 | GRAS family protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | Kalax.0218s0031.1.p |