PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0216s0017.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family MYB
Protein Properties Length: 265aa    MW: 30274.5 Da    PI: 7.2738
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0216s0017.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding54.72.3e-171057148
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                         rg+WT eEd  l++ ++ +G g+W++ ar  g++Rt+k+c++rw++yl
  Kalax.0216s0017.1.p 10 RGSWTVEEDTMLIHHITAHGEGNWNSLARSSGLKRTGKSCRLRWLNYL 57
                         89********************************************97 PP
2Myb_DNA-binding47.15.5e-1563106146
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
      Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                          rg+ T++E   + +++ ++G++ W++Ia+ ++ gRt++++k++w++
  Kalax.0216s0017.1.p  63 RGNLTPQEKSTIFQLHSKWGNR-WSKIAQQLP-GRTDNEIKNYWRT 106
                          7999******************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.6E-22360IPR009057Homeodomain-like
PROSITE profilePS5129415.826557IPR017930Myb domain
SuperFamilySSF466892.16E-298104IPR009057Homeodomain-like
SMARTSM007172.8E-14959IPR001005SANT/Myb domain
PfamPF002491.4E-141057IPR001005SANT/Myb domain
CDDcd001672.24E-101257No hitNo description
PROSITE profilePS5129422.97358112IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.2E-2261110IPR009057Homeodomain-like
SMARTSM007177.2E-1362110IPR001005SANT/Myb domain
PfamPF002491.2E-1363106IPR001005SANT/Myb domain
CDDcd001679.32E-1067106No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 265 aa     Download sequence    Send to blast
MSVQQSELRR GSWTVEEDTM LIHHITAHGE GNWNSLARSS GLKRTGKSCR LRWLNYLKPD  60
IKRGNLTPQE KSTIFQLHSK WGNRWSKIAQ QLPGRTDNEI KNYWRTRMQN QARQLKRVQS  120
DRFLESVRGF WVPTTTLDVK GDADYSSLVS NSSSQQQLKN RHHHPLSCSS PSSFVFPREA  180
DDSMGFLELK TVVDPPNSPS ANTTAGAYKY PEFYHSLEDL SFATTMSAAA AADDDRGLLQ  240
AARDDWMADD ETTDTAWNTD ELWQF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C3e-26211219128MYB TRANSFORMING PROTEIN
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028063702.15e-80transcription factor MYB62-like
TrEMBLA0A3S3QHZ98e-74A0A3S3QHZ9_9MAGN; Transcription factor MYB108-like protein
STRINGEOY001199e-74(Theobroma cacao)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68320.11e-66myb domain protein 62