PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0203s0009.6.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family MIKC_MADS
Protein Properties Length: 196aa    MW: 22650.9 Da    PI: 10.2365
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0203s0009.6.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF85.14.2e-271059251
                         ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
               SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                         ri+n++ rqvtfskRrng+lKKA+EL +LCdaev v++fsstgkly+++s
  Kalax.0203s0009.6.p 10 RIDNSTSRQVTFSKRRNGLLKKAKELAILCDAEVGVMVFSSTGKLYDFAS 59
                         8***********************************************86 PP
2K-box86.36.4e-2978170898
                K-box   8 s..leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLr 95 
                          +  +++++ + +q+e++ L++++++Lq+++R+l+G+d++ L +k+Lq+Le+qLeksl++iR++K++ll+++i+el +k + +++en +L 
  Kalax.0203s0009.6.p  78 QlmNSSSEIKFWQREANLLRQQLQSLQETHRQLMGDDMSGLGIKDLQNLENQLEKSLRSIRTTKDQLLIDEIQELNRKGNIIHQENLELY 167
                          13468999********************************************************************************** PP

                K-box  96 kkl 98 
                          +k+
  Kalax.0203s0009.6.p 168 QKV 170
                          997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004323.4E-39160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006631.3161IPR002100Transcription factor, MADS-box
CDDcd002651.23E-43278No hitNo description
SuperFamilySSF554556.28E-32291IPR002100Transcription factor, MADS-box
PRINTSPR004046.6E-28323IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PfamPF003193.7E-251057IPR002100Transcription factor, MADS-box
PRINTSPR004046.6E-282338IPR002100Transcription factor, MADS-box
PRINTSPR004046.6E-283859IPR002100Transcription factor, MADS-box
PfamPF014862.5E-2783170IPR002487Transcription factor, K-box
PROSITE profilePS5129715.51186176IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 196 aa     Download sequence    Send to blast
MGRGKVVIRR IDNSTSRQVT FSKRRNGLLK KAKELAILCD AEVGVMVFSS TGKLYDFAST  60
SMKSVIDRYN KSKEDQHQLM NSSSEIKFWQ REANLLRQQL QSLQETHRQL MGDDMSGLGI  120
KDLQNLENQL EKSLRSIRTT KDQLLIDEIQ ELNRKGNIIH QENLELYQKV SLIHDHVNQD  180
RYKVMVSFTS RKHVS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A1e-20182182MEF2C
5f28_B1e-20182182MEF2C
5f28_C1e-20182182MEF2C
5f28_D1e-20182182MEF2C
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021888090.11e-103MADS-box transcription factor 23-like isoform X3
SwissprotQ6EP494e-97MAD27_ORYSJ; MADS-box transcription factor 27
TrEMBLA0A200QXU61e-102A0A200QXU6_9MAGN; Transcription factor
STRINGXP_010254615.11e-102(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37940.13e-90AGAMOUS-like 21
Publications ? help Back to Top
  1. Puig J, et al.
    Analysis of the expression of the AGL17-like clade of MADS-box transcription factors in rice.
    Gene Expr. Patterns, 2013 Jun-Jul. 13(5-6): p. 160-70
    [PMID:23466806]
  2. Yu C, et al.
    The effects of fluctuations in the nutrient supply on the expression of five members of the AGL17 clade of MADS-box genes in rice.
    PLoS ONE, 2014. 9(8): p. e105597
    [PMID:25140876]