PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Kalax.0195s0024.2.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
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Family | FAR1 | ||||||||
Protein Properties | Length: 665aa MW: 76546.1 Da PI: 6.9189 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 71.9 | 1.5e-22 | 56 | 140 | 1 | 90 |
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 +fYn YA++ GF +r+ +s +++++e ++++f Cs+ g+++++ + ++r+etrtgC a++ +++ + ++w+++++el+HnH+++ Kalax.0195s0024.2.p 56 DFYNLYARQQGFGIRVGNSWFRSKQKERYRAKFSCSNAGFKRKSVAS-----HPRPETRTGCPAMVIIRLVDCKRWRIIEVELQHNHTFS 140 6*****************************************99887.....9**********************************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 4.1E-20 | 56 | 140 | IPR004330 | FAR1 DNA binding domain |
Pfam | PF10551 | 2.6E-22 | 262 | 354 | IPR018289 | MULE transposase domain |
PROSITE profile | PS50966 | 9.792 | 548 | 584 | IPR007527 | Zinc finger, SWIM-type |
Pfam | PF04434 | 7.8E-5 | 548 | 583 | IPR007527 | Zinc finger, SWIM-type |
SMART | SM00575 | 2.4E-5 | 559 | 586 | IPR006564 | Zinc finger, PMZ-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 665 aa Download sequence Send to blast |
MEVVSLNREP VFEEASHQGT DEDLELQDDT PGLALNRNPP QPTVGLEFDS FDEAYDFYNL 60 YARQQGFGIR VGNSWFRSKQ KERYRAKFSC SNAGFKRKSV ASHPRPETRT GCPAMVIIRL 120 VDCKRWRIIE VELQHNHTFS SEMKRVYKSH KKMVLAAKEE NKQDPFLETR IIKLYRTPTM 180 DSNFQLCANV GSGENRNHLE HSNHLELKDG DASTIYNFFC RLKLTDPNFF YLMDDDNEGR 240 LKNIFWADSR SRLTYESFND TIMIETTCLA SKYELQLISF VGVNNHGYSV LLGCSLVASV 300 SVENFIWVLR TWLACILQRP PQVVITDQSK VLQSAVAQVL PGARHCYSLW HIIQRLPEKL 360 GGLSGYEGIK NQFVNTVFSA LKFSEFETSW KLMIEQHGLG DNKWLQALHE DCQNWVPVYL 420 KDVFFAGLMP TQESDVLNGF FDGYVHKHTT IKEFLDKYEL ALHRKLLKDA IADQESRTLA 480 SGLVTKSSFE LQLSKVYSKE IFKKFQAEVE GMYSCFNTKQ LVTNGPVITY LVKERLTGKG 540 HERIVKQYEV SYEATTMDVR CICSLFNFKG YLCRHALSVL NYIGTEEIPS QYILPRWCTD 600 FKCRLGQGHP SNDVDTNDQL QQYHHLIRHG IPFVEYGAQS EQDYKAVLKE LESIVDKVIS 660 LHDN* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002282775.2 | 0.0 | PREDICTED: protein FAR1-RELATED SEQUENCE 6 | ||||
Refseq | XP_010648676.1 | 0.0 | PREDICTED: protein FAR1-RELATED SEQUENCE 6 | ||||
TrEMBL | M5Y3I6 | 0.0 | M5Y3I6_PRUPE; Uncharacterized protein | ||||
STRING | XP_008219518.1 | 0.0 | (Prunus mume) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G52520.1 | 0.0 | FAR1-related sequence 6 |
Link Out ? help Back to Top | |
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Phytozome | Kalax.0195s0024.2.p |