PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0195s0024.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family FAR1
Protein Properties Length: 680aa    MW: 78443.3 Da    PI: 6.8355
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0195s0024.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR171.81.5e-2271155190
                 FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 
                          +fYn YA++ GF +r+ +s  +++++e ++++f Cs+ g+++++  +     ++r+etrtgC a++ +++ + ++w+++++el+HnH+++
  Kalax.0195s0024.1.p  71 DFYNLYARQQGFGIRVGNSWFRSKQKERYRAKFSCSNAGFKRKSVAS-----HPRPETRTGCPAMVIIRLVDCKRWRIIEVELQHNHTFS 155
                          6*****************************************99887.....9**********************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031014.3E-2071155IPR004330FAR1 DNA binding domain
PfamPF105512.7E-22277369IPR018289MULE transposase domain
PROSITE profilePS509669.792563599IPR007527Zinc finger, SWIM-type
PfamPF044348.0E-5563598IPR007527Zinc finger, SWIM-type
SMARTSM005752.4E-5574601IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 680 aa     Download sequence    Send to blast
MDLACPFRYY FDVFQMEVVS LNREPVFEEA SHQGTDEDLE LQDDTPGLAL NRNPPQPTVG  60
LEFDSFDEAY DFYNLYARQQ GFGIRVGNSW FRSKQKERYR AKFSCSNAGF KRKSVASHPR  120
PETRTGCPAM VIIRLVDCKR WRIIEVELQH NHTFSSEMKR VYKSHKKMVL AAKEENKQDP  180
FLETRIIKLY RTPTMDSNFQ LCANVGSGEN RNHLEHSNHL ELKDGDASTI YNFFCRLKLT  240
DPNFFYLMDD DNEGRLKNIF WADSRSRLTY ESFNDTIMIE TTCLASKYEL QLISFVGVNN  300
HGYSVLLGCS LVASVSVENF IWVLRTWLAC ILQRPPQVVI TDQSKVLQSA VAQVLPGARH  360
CYSLWHIIQR LPEKLGGLSG YEGIKNQFVN TVFSALKFSE FETSWKLMIE QHGLGDNKWL  420
QALHEDCQNW VPVYLKDVFF AGLMPTQESD VLNGFFDGYV HKHTTIKEFL DKYELALHRK  480
LLKDAIADQE SRTLASGLVT KSSFELQLSK VYSKEIFKKF QAEVEGMYSC FNTKQLVTNG  540
PVITYLVKER LTGKGHERIV KQYEVSYEAT TMDVRCICSL FNFKGYLCRH ALSVLNYIGT  600
EEIPSQYILP RWCTDFKCRL GQGHPSNDVD TNDQLQQYHH LIRHGIPFVE YGAQSEQDYK  660
AVLKELESIV DKVISLHDN*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002282775.20.0PREDICTED: protein FAR1-RELATED SEQUENCE 6
RefseqXP_010648676.10.0PREDICTED: protein FAR1-RELATED SEQUENCE 6
TrEMBLM5Y3I60.0M5Y3I6_PRUPE; Uncharacterized protein
STRINGXP_008219518.10.0(Prunus mume)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G52520.10.0FAR1-related sequence 6