PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0195s0005.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family WRKY
Protein Properties Length: 335aa    MW: 36234.8 Da    PI: 10.1786
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0195s0005.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY97.49.1e-31263320359
                          -SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
                 WRKY   3 DgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                          D ++WrKYGqK++kgs++pr+YY+C+s  gCp++k+ver+ ++p+++++tYegeHnh 
  Kalax.0195s0005.1.p 263 DDFSWRKYGQKPIKGSPHPRGYYKCSSVrGCPARKHVERAVDEPTMLIVTYEGEHNHA 320
                          99************************988****************************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF105331.4E-16214259IPR018872Zn-cluster domain
Gene3DG3DSA:2.20.25.803.1E-32249320IPR003657WRKY domain
PROSITE profilePS5081130.044256322IPR003657WRKY domain
SuperFamilySSF1182903.4E-26258320IPR003657WRKY domain
SMARTSM007744.8E-37261321IPR003657WRKY domain
PfamPF031061.7E-26263319IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009737Biological Processresponse to abscisic acid
GO:0009938Biological Processnegative regulation of gibberellic acid mediated signaling pathway
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:1990841Molecular Functionpromoter-specific chromatin binding
Sequence ? help Back to Top
Protein Sequence    Length: 335 aa     Download sequence    Send to blast
MAVDLITRYN SLSSKLEDPA VQEAASGLES VGKLIRLLSQ HPPPQQQKFS SSTAADRAEE  60
DYNAVANDAV LKFNKVITLL SSRTRTGHAR FRRAPVPQSA PATSFFKKEP ESLDGGSSAA  120
ANLSRVYRAT PLQQIPPPPK QSQSGRHFQQ IPRNANESTT TINFSNSSVP SSFFSSLTGD  180
SVEDSVKQIS SSSAFQSGSC LSAKPPLSSS SSFKRKCSSS DVAAGKCGES SANCHCSKRR  240
KMRMKRVVRV PAISMKLADI PPDDFSWRKY GQKPIKGSPH PRGYYKCSSV RGCPARKHVE  300
RAVDEPTMLI VTYEGEHNHA LTVAETSGLI LESS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A4e-21249321273WRKY transcription factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salicylic acid and strongly during leaf senescence. {ECO:0000269|PubMed:11449049, ECO:0000269|PubMed:11722756}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008238914.11e-124PREDICTED: probable WRKY transcription factor 7
SwissprotQ9STX04e-81WRKY7_ARATH; Probable WRKY transcription factor 7
TrEMBLA0A314XGF81e-123A0A314XGF8_PRUYE; Putative WRKY transcription factor 7
STRINGXP_008238914.11e-124(Prunus mume)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G23320.13e-49WRKY DNA-binding protein 15