PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Kalax.0192s0035.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
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Family | WRKY | ||||||||
Protein Properties | Length: 350aa MW: 38925.9 Da PI: 6.7 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 87.9 | 8.7e-28 | 114 | 175 | 1 | 59 |
---SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 ldDg++WrKYGqK++ g+ +pr+YYrCt++ gC ++k+v+rs++dp+++++tY+g+H+++ Kalax.0192s0035.1.p 114 LDDGHSWRKYGQKDILGAIHPRGYYRCTHRhvqGCLATKQVQRSDQDPTIFHVTYRGQHTCT 175 59***************************99999**************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 2.5E-28 | 105 | 176 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 22.676 | 109 | 172 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 2.62E-25 | 113 | 175 | IPR003657 | WRKY domain |
SMART | SM00774 | 1.1E-39 | 114 | 176 | IPR003657 | WRKY domain |
Pfam | PF03106 | 5.4E-26 | 115 | 174 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 350 aa Download sequence Send to blast |
MEANSPAWEQ QALINELKQG RELAKQLQNH LNPSTASSET RLFLVQKIIS SYEKTLTKLN 60 PSNNSSKNNN SPRSQGSSHQ HYSTHQDASK KRKAMPKWTE QVQVKSETGL ESPLDDGHSW 120 RKYGQKDILG AIHPRGYYRC THRHVQGCLA TKQVQRSDQD PTIFHVTYRG QHTCTKSANS 180 SPNKPSEQQK RRKTDHTSDQ LRFSFGVKNE ERSPLEEQVF PTFSSFPSTS SGNKPDDYVF 240 MSTSAAEAET EDQFIMCAAE ASSFSPLYIS SATSDTDFYP PCHVPGGLGL SHLNVQISEF 300 EAAGSCLNFG TNSPMGVLDL DLDFPVRSAT STTAMDFDSS FPFGFLDYD* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6ir8_A | 3e-20 | 114 | 174 | 8 | 68 | OsWRKY45 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (PubMed:20409006). May regulate the early events of leaf senescence (PubMed:17369373, PubMed:20409006). Negatively regulates the expression of ESR/ESP (PubMed:20409006). Together with WRKY46 and WRKY70, promotes resistance to P.syringae, probably by enhancing salicylic acid (SA)- dependent genes. Contributes to the suppression of jasmonic acid (MeJA)-induced expression of PDF1.2 (PubMed:22325892). {ECO:0000269|PubMed:17369373, ECO:0000269|PubMed:20409006, ECO:0000269|PubMed:22325892}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By salicylic acid (SA) (PubMed:22268143, PubMed:22325892). Strong accumulation during leaf senescence (PubMed:22268143). Down-regulated by jasmonate. Triggered by P.syringae (PubMed:22325892). {ECO:0000269|PubMed:11449049, ECO:0000269|PubMed:11506370, ECO:0000269|PubMed:17369373, ECO:0000269|PubMed:22268143, ECO:0000269|PubMed:22325892}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_023899819.1 | 4e-94 | probable WRKY transcription factor 53 | ||||
Swissprot | Q9SUP6 | 5e-49 | WRK53_ARATH; Probable WRKY transcription factor 53 | ||||
TrEMBL | A0A2N9J396 | 7e-89 | A0A2N9J396_FAGSY; Uncharacterized protein | ||||
STRING | POPTR_0014s09190.1 | 3e-85 | (Populus trichocarpa) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G23810.1 | 7e-47 | WRKY family protein |
Link Out ? help Back to Top | |
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Phytozome | Kalax.0192s0035.1.p |