PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Kalax.0185s0012.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
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Family | ERF | ||||||||
Protein Properties | Length: 252aa MW: 28100.5 Da PI: 8.7374 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 60.2 | 4.7e-19 | 82 | 130 | 3 | 55 |
AP2 3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 y+GVr+++ +g+WvAeIr p++ r+r++lg+f+tae+Aa a++ a+ l+g Kalax.0185s0012.1.p 82 YRGVRQRH-WGKWVAEIRLPRN---RTRVWLGTFDTAEDAATAYDTAAYILRG 130 9******9.**********955...5**********************99987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51032 | 22.813 | 81 | 138 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 4.2E-34 | 81 | 144 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 4.8E-32 | 81 | 140 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.05E-22 | 81 | 139 | IPR016177 | DNA-binding domain |
CDD | cd00018 | 4.06E-22 | 82 | 140 | No hit | No description |
Pfam | PF00847 | 7.6E-12 | 82 | 129 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.3E-11 | 82 | 93 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.3E-11 | 104 | 120 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 252 aa Download sequence Send to blast |
LNSNMVSSAA STSLFFPIWP QYETQPSTTD WPEISQTSTS HQSNDGSREY WLSARKTQPM 60 KYTTGGKMQQ KASTSTSQGK AYRGVRQRHW GKWVAEIRLP RNRTRVWLGT FDTAEDAATA 120 YDTAAYILRG DYAQLNFPDQ KHQLNSNSLS GSTKALLEAK LQAIESQAQR KKTVEDPVSL 180 QSSEPSQISS KNSSMEDLKL KVLREVPLKK ELIELDNKFS GEVLGDMEGG GGIQLSRMPS 240 LDMDMIWDAI L* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 3e-21 | 77 | 138 | 1 | 63 | ATERF1 |
3gcc_A | 3e-21 | 77 | 138 | 1 | 63 | ATERF1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011041894.1 | 2e-73 | PREDICTED: ethylene-responsive transcription factor ERF062-like isoform X2 | ||||
Swissprot | Q9SVQ0 | 9e-63 | ERF62_ARATH; Ethylene-responsive transcription factor ERF062 | ||||
TrEMBL | A0A2N9G4S0 | 2e-71 | A0A2N9G4S0_FAGSY; Uncharacterized protein | ||||
TrEMBL | A9PL93 | 2e-71 | A9PL93_POPTR; RAP2-like protein | ||||
STRING | POPTR_0017s08250.1 | 3e-72 | (Populus trichocarpa) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G13620.1 | 6e-50 | ERF family protein |
Link Out ? help Back to Top | |
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Phytozome | Kalax.0185s0012.1.p |