PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Kalax.0182s0082.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
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Family | Trihelix | ||||||||
Protein Properties | Length: 433aa MW: 49044.4 Da PI: 6.1427 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 67.4 | 2.8e-21 | 115 | 211 | 1 | 85 |
trihelix 1 rWtkqevlaLiearremeerlrrgk...........lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkr.tsessst 78 +Wt++ v++Li a+ ++++ + + +kk++W+ vsk m ++g+++sp+qC++k+++lnkryk+++e+ +++ +++++++ Kalax.0182s0082.1.p 115 KWTDNVVRLLISAVACVGDDGSLDGveglrrksgilQKKGKWKTVSKIMISKGCSVSPQQCEDKFNDLNKRYKRLNEILGRGtSCRVVEN 204 7**************777777754334445556788**********************************************66999999 PP trihelix 79 cpyfdql 85 ++ d++ Kalax.0182s0082.1.p 205 PALMDSM 211 9888887 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF13837 | 5.4E-19 | 113 | 238 | No hit | No description |
Sequence ? help Back to Top |
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Protein Sequence Length: 433 aa Download sequence Send to blast |
MDNSGLSCGF LSGLNGVMLD LESPINKNQQ VQMDPSLMNH QHHVDKISGI GLGHHSMGLF 60 ESRNCNSNGI SMNFGKGKAI AVTSNENTSD DDEDLDGDNC HGPNEKRRSP WHRMKWTDNV 120 VRLLISAVAC VGDDGSLDGV EGLRRKSGIL QKKGKWKTVS KIMISKGCSV SPQQCEDKFN 180 DLNKRYKRLN EILGRGTSCR VVENPALMDS MPNLSSKMKD VVRKILCSKH LFYQEMCAYH 240 NGQRIPNCHD LDLQGLSVPL ARSTLDHHGP EEEEPDEDDD PDDNDLDNND HHIAADDSAR 300 VRKRKSPNED NDNLYSGALD EIEAEMAAIV EDPTKTLVDK RECIKKRMLL LLEHRVNIQA 360 EALEIESRHF KWLRYRHKKD GEFMKLKLEN ERQKLEYERM ELLIHEKQLE LESKKPQEGE 420 ACVGLEILSV RK* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018830974.1 | 1e-159 | PREDICTED: uncharacterized protein LOC108998738 | ||||
Refseq | XP_021592582.1 | 1e-160 | uncharacterized protein LOC110600136 | ||||
Refseq | XP_021592583.1 | 1e-160 | uncharacterized protein LOC110600136 | ||||
Refseq | XP_021592584.1 | 1e-160 | uncharacterized protein LOC110600136 | ||||
TrEMBL | A0A251J809 | 1e-158 | A0A251J809_MANES; Uncharacterized protein | ||||
TrEMBL | A0A2I4FH56 | 1e-158 | A0A2I4FH56_JUGRE; uncharacterized protein LOC108998738 | ||||
STRING | cassava4.1_007480m | 1e-159 | (Manihot esculenta) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G21200.1 | 1e-75 | sequence-specific DNA binding transcription factors |
Link Out ? help Back to Top | |
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Phytozome | Kalax.0182s0082.1.p |