PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0179s0003.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family GATA
Protein Properties Length: 306aa    MW: 33217.9 Da    PI: 6.8555
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0179s0003.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA53.33.7e-17225261135
                 GATA   1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkkgl 35 
                          C++Cgt+   Tp++Rrgp+g++tLCnaCGl+++ kg+
  Kalax.0179s0003.1.p 225 CRHCGTSGkdTPMMRRGPEGPRTLCNACGLMWANKGT 261
                          *******999************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009791.4E-1282117IPR010399Tify domain
PROSITE profilePS5132014.91182117IPR010399Tify domain
PfamPF062003.1E-1384116IPR010399Tify domain
PROSITE profilePS5101712.917150192IPR010402CCT domain
PfamPF062039.2E-16150192IPR010402CCT domain
SMARTSM004012.3E-11219272IPR000679Zinc finger, GATA-type
PROSITE profilePS501148.88219275IPR000679Zinc finger, GATA-type
SuperFamilySSF577162.04E-11222278No hitNo description
Gene3DG3DSA:3.30.50.101.4E-14224266IPR013088Zinc finger, NHR/GATA-type
CDDcd002022.03E-15224277No hitNo description
PROSITE patternPS003440225252IPR000679Zinc finger, GATA-type
PfamPF003204.7E-15225261IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 306 aa     Download sequence    Send to blast
MPYSHPTGAE MDDMHGRDAQ MGDSIMQYMQ EHDHEVHQMG NVSGMEEGVN DGVVGGNEGM  60
DGHMGREGEN MGDDRYAIVA QGPENGNQLT LSFQGQVYVF DSVSPDKVQA VLLLLGGQEL  120
PSTMSTSTVL NPQGSRGISG MPQRLSVSQR LASLTRFKEK RKERNFEKKI RYTVRKEVAL  180
RMNRNKGQFT SSKPNTDDSG SGVTSWGSSQ NWASDGSGSQ QAAACRHCGT SGKDTPMMRR  240
GPEGPRTLCN ACGLMWANKG TLKDLSKGTP SQPRQNHTMN HNVVENGHLE ADQMVLRPGN  300
ISDSS*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250, ECO:0000269|PubMed:14966217}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00369DAPTransfer from AT3G21175Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015894174.11e-115GATA transcription factor 28 isoform X1
RefseqXP_021845718.11e-115GATA transcription factor 28
RefseqXP_021845719.11e-115GATA transcription factor 28
SwissprotQ8GXL71e-111GAT24_ARATH; GATA transcription factor 24
TrEMBLA0A0K9RS541e-113A0A0K9RS54_SPIOL; Uncharacterized protein
STRINGXP_010696086.11e-112(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G21175.26e-95ZIM-like 1
Publications ? help Back to Top
  1. Haas BJ, et al.
    Full-length messenger RNA sequences greatly improve genome annotation.
    Genome Biol., 2002. 3(6): p. RESEARCH0029
    [PMID:12093376]