PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Kalax.0178s0050.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
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Family | B3 | ||||||||
Protein Properties | Length: 573aa MW: 64985 Da PI: 4.9321 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 40.4 | 5.1e-13 | 16 | 100 | 8 | 99 |
-HHHHTT-EE--HHH.HTT.---..--SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS B3 8 sdvlksgrlvlpkkfaeeh.ggkkeesktltled.esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 ++++ + l +p f e++ +g + +++ l++ ++ + W+v + ++s + +GW eF++a++Lk+g f+vFk+dg + f +v+ Kalax.0178s0050.1.p 16 LHNFAAN-LAIPVAFYEKYlEGRPGCGTRAELRSrLRRQGWKVWM--VGRS----IVDGWAEFADAHELKVGYFLVFKYDGGTVF--HVS 96 4556655.9***********9999**********778899*****..8888....899*********************998888..**9 PP EE-S CS B3 96 vfrk 99 vf+ Kalax.0178s0050.1.p 97 VFDP 100 9986 PP | |||||||
2 | B3 | 50.7 | 3.1e-16 | 145 | 223 | 16 | 96 |
EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS B3 16 lvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96 l +p f+++++++ +s +++++de g+ W vk++ +k++++++ +GW++Fv+ ngL+ gD + F+ ++ +++ +v+++ Kalax.0178s0050.1.p 145 LHFPACFCAANKLNVSCS-EIIVKDEAGKAWPVKVKCKKGGNAVYTMGGWRSFVEGNGLQKGDRFNFRIVS-KGKIPVLSF 223 569999*****9998887.****************9999999999999********************765.444445444 PP | |||||||
3 | B3 | 32.5 | 1.5e-10 | 351 | 432 | 14 | 98 |
T-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS B3 14 grlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 l++p f +++++++ + ++ ++d +g+ W v+++ +++ + ++ +GW + + ng++ gD F++++ ++++v++++r Kalax.0178s0050.1.p 351 TSLYFPVYFSRANNLDS-C-SEIDVKDDRGKLWPVNIRLKRNTNLVYTVGGWTSLIRGNGIRKGDRYEFRVIS-YGTKPVLSFRR 432 34689999999999983.4.49***************99999999999**********************987.67778877765 PP | |||||||
4 | B3 | 45.2 | 1.7e-14 | 472 | 564 | 6 | 97 |
..-HHHHTT-EE--HHH.HTT...---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE.. CS B3 6 tpsdvlksgrlvlpkkfaeeh...ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefel 92 ++ +l ++rl l +fa+ + + +s +++l++++g+sW +l+ +++s r+++t+GW eF+ angL++g ++ +++++ +++ l Kalax.0178s0050.1.p 472 ITQASLDRSRLFLGINFAKMNglaD--RDRSGDMILRNSQGKSWVATLKREGNSFRFFITNGWTEFALANGLEAGRVFRLEVVEPESKLL 559 4566778889***********7533..347779***************88999999***********************99887666656 PP EEEEE CS B3 93 vvkvf 97 ++k+ Kalax.0178s0050.1.p 560 TLKLT 564 66665 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 2.7E-15 | 5 | 103 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 5.89E-17 | 5 | 107 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 10.207 | 8 | 101 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 9.29E-15 | 9 | 99 | No hit | No description |
SMART | SM01019 | 2.2E-13 | 11 | 101 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 5.8E-9 | 20 | 99 | IPR003340 | B3 DNA binding domain |
SuperFamily | SSF101936 | 5.49E-17 | 126 | 224 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 2.2E-15 | 128 | 224 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 4.67E-14 | 132 | 225 | No hit | No description |
SMART | SM01019 | 8.1E-13 | 133 | 227 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 3.1E-14 | 143 | 224 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 12.407 | 163 | 226 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 10.941 | 338 | 433 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 2.77E-10 | 338 | 432 | No hit | No description |
Gene3D | G3DSA:2.40.330.10 | 5.4E-10 | 338 | 440 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 3.14E-12 | 340 | 434 | IPR015300 | DNA-binding pseudobarrel domain |
SMART | SM01019 | 3.4E-10 | 345 | 434 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 8.2E-9 | 352 | 432 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 12.731 | 467 | 567 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 2.05E-12 | 467 | 558 | No hit | No description |
SuperFamily | SSF101936 | 1.86E-14 | 467 | 559 | IPR015300 | DNA-binding pseudobarrel domain |
SMART | SM01019 | 2.7E-13 | 468 | 567 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 1.6E-12 | 469 | 561 | IPR015300 | DNA-binding pseudobarrel domain |
Pfam | PF02362 | 6.7E-13 | 471 | 566 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009793 | Biological Process | embryo development ending in seed dormancy | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 573 aa Download sequence Send to blast |
MANPSPKIPH FFQPLLHNFA ANLAIPVAFY EKYLEGRPGC GTRAELRSRL RRQGWKVWMV 60 GRSIVDGWAE FADAHELKVG YFLVFKYDGG TVFHVSVFDP SACEVEYGDE HDEDNAVEGD 120 GEELKMDSGQ TSYVGTLRPS YLISLHFPAC FCAANKLNVS CSEIIVKDEA GKAWPVKVKC 180 KKGGNAVYTM GGWRSFVEGN GLQKGDRFNF RIVSKGKIPV LSFRRIGGMR DQTEVATRAK 240 RRKAVEVPKL DTSAGEVEHP SLDEDEDDDV EQDDEEDTVE EDDDEDLLEE DEEEEDMVEE 300 DYDEEEDMVD GDDEEHKTEL DHSRKRMKNR NPDTDESTAS YVGKMCRAYL TSLYFPVYFS 360 RANNLDSCSE IDVKDDRGKL WPVNIRLKRN TNLVYTVGGW TSLIRGNGIR KGDRYEFRVI 420 SYGTKPVLSF RRIGPKRKAG LEEEEKVPEL ALRHFEKTTG SLIPGTYLIR TITQASLDRS 480 RLFLGINFAK MNGLADRDRS GDMILRNSQG KSWVATLKRE GNSFRFFITN GWTEFALANG 540 LEAGRVFRLE VVEPESKLLT LKLTRRVTLE DL* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 323 | 329 | RKRMKNR |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G31640.1 | 4e-44 | B3 family protein |
Link Out ? help Back to Top | |
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Phytozome | Kalax.0178s0050.1.p |