PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Kalax.0176s0050.3.p

Organism

Kalanchoe marnieriana

Taxonomic ID

80907

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe

Family

FAR1

Protein Properties

Length: 826aa MW: 93419.7 Da PI: 7.243

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Kalax.0176s0050.3.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	49.5	1.4e-15	39	113	2	90
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 +Y++YA+++GFs+++ + ++ k +g i++ +f Cske +++++ + C+a l++++++ g w+vtk++++HnH+++ Kalax.0176s0050.3.p 39 YYDAYARRAGFSTSVGQYNRAKPDGPIVSWDFACSKEVFKRKNADC--------------CNAALRIERKDPGDWVVTKFVEDHNHSIV 113 8************************************9997665..............************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	1.2E-12	39	113	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	3.8E-29	241	333	IPR018289	MULE transposase domain
Pfam	PF04434	1.0E-11	518	552	IPR007527	Zinc finger, SWIM-type
PROSITE profile	PS50966	11.597	518	554	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	1.4E-8	529	556	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 826 aa Download sequence Send to blast
MIMAETCPQG ELHDDRDDED AHKPHVGMKF ESVDSAKSYY DAYARRAGFS TSVGQYNRAK 60 PDGPIVSWDF ACSKEVFKRK NADCCNAALR IERKDPGDWV VTKFVEDHNH SIVRPNKVYH 120 LPTRRHFAGS KNNGETAQAA TDRPVSMDGN PMSFESHTNV SSGEQFPTTR SSGSMSFTMP 180 YSQRKTLGKD AHNLLGYFKN MQAENPGFFY AIQVDEGNRI TNVFWADARS RTAYNHFGDA 240 VIFDTMYRPN QYQVSFAPFT GINHHGQMVL FGCALILDES EASFTWLFST WLSAMNGRPP 300 VSFTTDQDRA IQAAVSQVFP KTRRCICKWH ILREGRERLA HVFIAHPPFH GELYSCINFS 360 ETIEEFESSW NSLLDKYNLH KNEWLQAVFK ARNQWVPVYF RDTFFAALSS NHGVGSIFDQ 420 YVNQQTSLPL FFRQYEMALE RSLEEEIEAD YDTINNTPFL KTPSPMEQQA ANLYTKMVFM 480 KFQEELVETF IYTANKIDVD GPVTKFRVVK YEHDHKAYTV SMNISEMKAS CSCKMFEYSG 540 ILCRHILTVF TVTNVLTVPP NYILKRWTRN ARTGAGMDEQ NVNPHCAESL TARFNGICRE 600 AVKLAEQAAI CAESYDVAIN ALRDAGKKIA VLKRNSTKPL FTKRHRSGNI QVDTNMNTAL 660 LGVSETPSLW PWQEPNLNHS DSNYAGLSVA DLNQIQPTMA VASMPDPNET VLTYYKSMTW 720 VIENRTSAIA SKVAVIKLKL QDYAKTPADE TEVQFRVTKV SLEPMLKSMS FISQQLSAPS 780 NKVAVINLKL QDMQTTTGGT ELKFQVSRST LASLLASMGC IQEHL*

Sequence ? help Back to Top

Protein Sequence Length: 826 aa Download sequence Send to blast

MIMAETCPQG ELHDDRDDED AHKPHVGMKF ESVDSAKSYY DAYARRAGFS TSVGQYNRAK  60
PDGPIVSWDF ACSKEVFKRK NADCCNAALR IERKDPGDWV VTKFVEDHNH SIVRPNKVYH  120
LPTRRHFAGS KNNGETAQAA TDRPVSMDGN PMSFESHTNV SSGEQFPTTR SSGSMSFTMP  180
YSQRKTLGKD AHNLLGYFKN MQAENPGFFY AIQVDEGNRI TNVFWADARS RTAYNHFGDA  240
VIFDTMYRPN QYQVSFAPFT GINHHGQMVL FGCALILDES EASFTWLFST WLSAMNGRPP  300
VSFTTDQDRA IQAAVSQVFP KTRRCICKWH ILREGRERLA HVFIAHPPFH GELYSCINFS  360
ETIEEFESSW NSLLDKYNLH KNEWLQAVFK ARNQWVPVYF RDTFFAALSS NHGVGSIFDQ  420
YVNQQTSLPL FFRQYEMALE RSLEEEIEAD YDTINNTPFL KTPSPMEQQA ANLYTKMVFM  480
KFQEELVETF IYTANKIDVD GPVTKFRVVK YEHDHKAYTV SMNISEMKAS CSCKMFEYSG  540
ILCRHILTVF TVTNVLTVPP NYILKRWTRN ARTGAGMDEQ NVNPHCAESL TARFNGICRE  600
AVKLAEQAAI CAESYDVAIN ALRDAGKKIA VLKRNSTKPL FTKRHRSGNI QVDTNMNTAL  660
LGVSETPSLW PWQEPNLNHS DSNYAGLSVA DLNQIQPTMA VASMPDPNET VLTYYKSMTW  720
VIENRTSAIA SKVAVIKLKL QDYAKTPADE TEVQFRVTKV SLEPMLKSMS FISQQLSAPS  780
NKVAVINLKL QDMQTTTGGT ELKFQVSRST LASLLASMGC IQEHL*

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription activator involved in regulating light control of development.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269\|PubMed:15591448}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015876191.1	0.0	protein FAR1-RELATED SEQUENCE 3-like
Refseq	XP_024927403.1	0.0	protein FAR1-RELATED SEQUENCE 3-like
Swissprot	Q9ZVC9	0.0	FRS3_ARATH; Protein FAR1-RELATED SEQUENCE 3
TrEMBL	A0A2R6R1D8	0.0	A0A2R6R1D8_ACTCH; Protein FAR1-RELATED SEQUENCE like
STRING	VIT_13s0047g00330.t01	0.0	(Vitis vinifera)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G27110.2	0.0	FAR1-related sequence 3

Link Out ? help Back to Top
Phytozome	Kalax.0176s0050.3.p

Publications ? help Back to Top
Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]