PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0175s0013.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family WRKY
Protein Properties Length: 372aa    MW: 40616.1 Da    PI: 6.3491
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0175s0013.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY103.89.7e-33200257259
                          --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                 WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                          +Dgy+WrKYGqK vk+s+fprsYYrCtsa+C vkk+vers  dp++v++tYeg+H+h+
  Kalax.0175s0013.1.p 200 EDGYRWRKYGQKAVKNSPFPRSYYRCTSASCGVKKRVERSCADPSTVVTTYEGKHTHP 257
                          8********************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.806.0E-34184259IPR003657WRKY domain
SuperFamilySSF1182901.1E-28191259IPR003657WRKY domain
PROSITE profilePS5081132.019194259IPR003657WRKY domain
SMARTSM007743.6E-38199258IPR003657WRKY domain
PfamPF031064.9E-26200257IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 372 aa     Download sequence    Send to blast
MMKKEAMESL ISGGSDTSSL CYSDLLGGGA AGYGNLCSMF DGGVVNGAGA ELGFLEMLGV  60
QEFQIPMGYM FDEMAHSGEV MTSSWQAISI DQVPAAGYNN GFVKPMNKRQ QQPLFDERNN  120
NAPGTPNSSS ISYAFNNEGM VVESEQDDKA DEEEEDGDDA EDQKGSGKSK KHLKAKKGKL  180
KKQRQPRIAF MTKSEVDHLE DGYRWRKYGQ KAVKNSPFPR SYYRCTSASC GVKKRVERSC  240
ADPSTVVTTY EGKHTHPSPL TPRSISSASF PDSAAFAALP SLMHMNNLHS HYGQQLPSPC  300
FALPFNCNSY PMHSLTTSPA APPNFNSFTP SPNNNNNNNN NENVTSNPNQ SVLRDHGLLQ  360
DLIPSPVRKE E*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A2e-271922591077Probable WRKY transcription factor 4
2lex_A2e-271922591077Probable WRKY transcription factor 4
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47260.12e-46WRKY DNA-binding protein 23