PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0174s0037.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family B3
Protein Properties Length: 330aa    MW: 38327.2 Da    PI: 10.0448
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0174s0037.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B351.32.1e-16361181199
                          HHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
                   B3  11 lksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 
                          l+++ l++p kfa ++  k   + t +l+ ++g  W+vk+   k+ + ++l++GW +Fv ++ L+e Df++F+++g+s+f   v++f++
  Kalax.0174s0037.1.p  36 LSRSELRVPEKFAMKFPVK--LGETTKLRGPTGDIWRVKV--VKTEEDVLLREGWPGFVYDHFLNEYDFLMFHYTGSSSF--DVSIFDR 118
                          677889*******999655..6679***************..**********************************9999..9999998 PP
2B351.51.8e-16138227199
                          EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS
                   B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsef 90 
                          ffkv+  +   +s+ l +p k   ++ +  + +  ++l+ +sg++W+v    ++ +g ++l++GW +Fv+++ L+e  f+vF+++g s+f
  Kalax.0174s0037.1.p 138 FFKVM--NKEYRSK-LLIPEKLKVRFVE--KMGNIIRLKGPSGNVWKVGA--KRVGGDVILGRGWAGFVSDHSLEESNFLVFHYTGASSF 220
                          77877..3333333.6666665434422..23346***************..9********************************99999 PP

                          ..EEEEE-S CS
                   B3  91 elvvkvfrk 99 
                             v +f+ 
  Kalax.0174s0037.1.p 221 --SVLIFDP 227
                          ..9999875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.107.4E-2123121IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.73E-2025121IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086312.90126119IPR003340B3 DNA binding domain
SMARTSM010199.3E-1031119IPR003340B3 DNA binding domain
CDDcd100172.85E-1436117No hitNo description
PfamPF023621.1E-1336118IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.102.4E-20135230IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019364.12E-22135233IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086313.31135228IPR003340B3 DNA binding domain
CDDcd100177.02E-16136226No hitNo description
SMARTSM010195.1E-9138228IPR003340B3 DNA binding domain
PfamPF023621.1E-13138226IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 330 aa     Download sequence    Send to blast
MAEMDEREEI SRAMEKQIYW NQFESTKHHF FETVELSRSE LRVPEKFAMK FPVKLGETTK  60
LRGPTGDIWR VKVVKTEEDV LLREGWPGFV YDHFLNEYDF LMFHYTGSSS FDVSIFDRNG  120
CMKDLRMLQD QFEIKPHFFK VMNKEYRSKL LIPEKLKVRF VEKMGNIIRL KGPSGNVWKV  180
GAKRVGGDVI LGRGWAGFVS DHSLEESNFL VFHYTGASSF SVLIFDPSRC EKESSHFVKP  240
AAISADLRGE RARKMGKLPA GFTGGDHERE ETPISKMQCK VNPKMKGKMR IQEKNDTPAH  300
KTMKLPKELT LEQLQDLKIK HNQRKQQRR*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G33280.14e-18B3 family protein