PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Kalax.0174s0014.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
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Family | LBD | ||||||||
Protein Properties | Length: 347aa MW: 38050.4 Da PI: 5.6977 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 135.6 | 1.8e-42 | 6 | 105 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleql 90 +CaaCk++rrkC+++C++apyfp e+p+kf nvhk+FG snv+k+l++l++ +r+da++sl+yeAear+rdP+yG+vg+i+ lqq+l+q Kalax.0174s0014.1.p 6 PCAACKFQRRKCTPECIFAPYFPPEDPQKFVNVHKVFGGSNVSKILSDLNPAQRDDAARSLAYEAEARLRDPIYGCVGLISYLQQRLKQI 95 7***************************************************************************************** PP DUF260 91 kaelallkee 100 + ++ ++++e Kalax.0174s0014.1.p 96 QIDITEARKE 105 ***9999887 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 27.069 | 5 | 106 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 2.5E-41 | 6 | 103 | IPR004883 | Lateral organ boundaries, LOB |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009954 | Biological Process | proximal/distal pattern formation | ||||
GO:0009965 | Biological Process | leaf morphogenesis | ||||
GO:0048441 | Biological Process | petal development |
Sequence ? help Back to Top |
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Protein Sequence Length: 347 aa Download sequence Send to blast |
MSSNAPCAAC KFQRRKCTPE CIFAPYFPPE DPQKFVNVHK VFGGSNVSKI LSDLNPAQRD 60 DAARSLAYEA EARLRDPIYG CVGLISYLQQ RLKQIQIDIT EARKELASYV GPSAMLMTIP 120 QHGYGQMMYH PQQPQMMDNP SSSSSALPYT HLMGTPPVYG PGTSQQLVIR DQQQQQLMGG 180 GNHSSSASAL PYTSLIPSMM GAGSSSQPLL TREQSQLHGV DPQQYGAVAA TEQHELMRNY 240 ELQQQQQQDY LQYEPGGGPI HGSGFIQMAA DETGGGPSLA LGVNYDNPYN QIQQQQQHDI 300 VHRALQAQLA LQSQLQHAEH VLQTPLDQQP QNKAESDEDR SADPSS* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 7e-47 | 3 | 109 | 8 | 114 | LOB family transfactor Ramosa2.1 |
5ly0_B | 7e-47 | 3 | 109 | 8 | 114 | LOB family transfactor Ramosa2.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
STRING | VIT_07s0197g00020.t01 | 1e-70 | (Vitis vinifera) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G66870.1 | 1e-56 | ASYMMETRIC LEAVES 2-like 1 |
Link Out ? help Back to Top | |
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Phytozome | Kalax.0174s0014.1.p |