PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0170s0030.9.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family ARR-B
Protein Properties Length: 542aa    MW: 60276.8 Da    PI: 5.8552
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0170s0030.9.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like87.99.7e-28304358156
              G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 
                          k +++Wt++LH++Fv+aveqL G ++A+P++ilelmkv+gLt+++v+SHLQkYR++
  Kalax.0170s0030.9.p 304 KMKVDWTSDLHKKFVQAVEQL-GVDQAIPSRILELMKVEGLTRHNVASHLQKYRMH 358
                          5689*****************.********************************96 PP
2Response_reg23.23.5e-09201261109
                          EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHH CS
         Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedale 88 
                          vl+ d++ + ++ lr+ le  +y +v ++ + +eal  + ++   +++ ++ ++  + +G   +k +++++  lp i+  + +  +++ +
  Kalax.0170s0030.9.p  20 VLLLDKDANYASELRSRLEGMDY-IVSTFCNEDEALSAVLNESevFHVAIVEVSTVEDNGN--FKFLQKAK-GLPTIMTASVQCLTTTMK 105
                          8999*******************.***************777778*********9999995..77787777.999999888888****** PP

                          HHHTTESEEEESS--HHHHHH CS
         Response_reg  89 alkaGakdflsKpfdpeelvk 109
                          ++ +Ga ++l Kp ++++l++
  Kalax.0170s0030.9.p 106 CIALGAIEVLNKPLSEDKLRN 126
                          ******************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF521725.27E-1216132IPR011006CheY-like superfamily
Gene3DG3DSA:3.40.50.23005.2E-1416163No hitNo description
PROSITE profilePS5011017.89119132IPR001789Signal transduction response regulator, receiver domain
PfamPF000721.9E-520127IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5129413.671301360IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.0E-26301360IPR009057Homeodomain-like
SuperFamilySSF466891.08E-17302360IPR009057Homeodomain-like
TIGRFAMsTIGR015571.8E-25304358IPR006447Myb domain, plants
PfamPF002492.1E-7307356IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 542 aa     Download sequence    Send to blast
MVCTANDLLE WEDFPKGLRV LLLDKDANYA SELRSRLEGM DYIVSTFCNE DEALSAVLNE  60
SEVFHVAIVE VSTVEDNGNF KFLQKAKGLP TIMTASVQCL TTTMKCIALG AIEVLNKPLS  120
EDKLRNIWQH VVHKAYNAGD SAVAESPRQV KEEELHDKLL EEMLCMSAEG SDDEHDRSSG  180
NDKYPAPSTP QLKQVRLLDD ASCHDQANWS TEKGSAEHCE ESKSVETTCC NAAPDMPVVE  240
AGELMHESVV KEENDSADGC KSESDTSPHQ KNVPETGSLG GNARMQTKAS ESRGPCGAKT  300
NRKKMKVDWT SDLHKKFVQA VEQLGVDQAI PSRILELMKV EGLTRHNVAS HLQKYRMHRR  360
HALPNREERR ISVRPKDTMQ SSYYYQHKPI MAYPPPYHSN QTLMANQAYP MWVQPGSHTA  420
GLQAWGPPGP PYQTWPWKSY AAMQADAWGC PVMPPLHHGS YSYYPQNASG YYGEVENTGH  480
TMTTNSHDDR LLADEVIDRV VKEAISKPWL PLPLGLKPPS TESVLSELSK QGISNIPPPS  540
H*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A6e-16300357158ARR10-B
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-[AG]GATT-3'. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002279150.10.0PREDICTED: two-component response regulator-like APRR2 isoform X1
SwissprotQ6LA431e-128APRR2_ARATH; Two-component response regulator-like APRR2
TrEMBLA0A438JZR00.0A0A438JZR0_VITVI; Two-component response regulator-like APRR2
STRINGVIT_02s0012g00570.t010.0(Vitis vinifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18020.61e-130ARR-B family protein
Publications ? help Back to Top
  1. Gong L, et al.
    Transcriptome Profiling of the Potato (Solanum tuberosum L.) Plant under Drought Stress and Water-Stimulus Conditions.
    PLoS ONE, 2015. 10(5): p. e0128041
    [PMID:26010543]