PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Kalax.0168s0072.3.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
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Family | GATA | ||||||||
Protein Properties | Length: 349aa MW: 37722.4 Da PI: 6.9672 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 58.1 | 1.2e-18 | 257 | 290 | 1 | 34 |
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 C++C tkTp+WR gp g+ktLCnaCG++y++ + Kalax.0168s0072.3.p 257 CQHCEITKTPQWRAGPLGPKTLCNACGVRYKSGR 290 *******************************987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PIRSF | PIRSF016992 | 1.5E-75 | 6 | 342 | IPR016679 | Transcription factor, GATA, plant |
PROSITE profile | PS50114 | 11.279 | 251 | 287 | IPR000679 | Zinc finger, GATA-type |
SMART | SM00401 | 7.2E-16 | 251 | 301 | IPR000679 | Zinc finger, GATA-type |
SuperFamily | SSF57716 | 1.43E-14 | 255 | 314 | No hit | No description |
Gene3D | G3DSA:3.30.50.10 | 1.2E-14 | 255 | 288 | IPR013088 | Zinc finger, NHR/GATA-type |
CDD | cd00202 | 7.50E-15 | 256 | 313 | No hit | No description |
PROSITE pattern | PS00344 | 0 | 257 | 282 | IPR000679 | Zinc finger, GATA-type |
Pfam | PF00320 | 3.1E-16 | 257 | 290 | IPR000679 | Zinc finger, GATA-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 349 aa Download sequence Send to blast |
MAGGGPSFAD DFDCGNFFDQ IDDLLDFPDE SCNNNGESGL LCEDFKDFPS IWTQPDTFPG 60 SESVFSGSNS HSASDLSAEL SVPYEDIAEL EWLSTFVEDS FSAGNSLTID VTNSVPSKVV 120 SPSANQFRTS SPVSVLESSS SSYAGGKVMP VKPALPTGGR CGRARSKRPR PSTFSPRPSM 180 QLISPTASFT RAATLFDVGK TGCAEFESFN DTGYSLKMSK SAGKMEHKKK KKMKLSADVN 240 QNENPNPLSP EVAVRKCQHC EITKTPQWRA GPLGPKTLCN ACGVRYKSGR LFPEYRPAAS 300 PTFVPSVHSN SHKKVLEMRV KACDRTPLVG DSSKIELIPN KNPLVDYM* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 166 | 170 | KRPRP |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018844833.1 | 1e-111 | PREDICTED: GATA transcription factor 8-like | ||||
TrEMBL | A0A2N9EQX6 | 1e-113 | A0A2N9EQX6_FAGSY; GATA transcription factor | ||||
STRING | POPTR_0010s23010.1 | 1e-110 | (Populus trichocarpa) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G54810.2 | 6e-42 | GATA family protein |
Link Out ? help Back to Top | |
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Phytozome | Kalax.0168s0072.3.p |