PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Kalax.0164s0077.1.p

Organism

Kalanchoe marnieriana

Taxonomic ID

80907

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe

Family

HSF

Protein Properties

Length: 198aa MW: 22443.6 Da PI: 9.3614

Description

HSF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Kalax.0164s0077.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HSF_DNA-bind	105.7	3.7e-33	16	114	2	102
HHHHHHHHHCTG.......GGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEES CS HSF_DNA-bind 2 Flkklyeilede.......elkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhk 84 Fl+k+y++le++ + k+++sw++ng+ fvv+ ++efa+ +LpkyFkh+nf+SF+RQLn+YgFkk+++++ weF+h+ Kalax.0164s0077.1.p 16 FLSKTYDLLEEAgdagegrNGKKIVSWNANGDGFVVWCTSEFADILLPKYFKHNNFSSFIRQLNTYGFKKTTSKR---------WEFQHE 96 9*******666666666999*********************************************9998.........** PP XXXXXXXXXXXXXXXXXX CS HSF_DNA-bind 85 sFkkgkkellekikrkks 102 +F+kg+++ll +i rk+ Kalax.0164s0077.1.p 97 KFRKGQRHLLAEISRKRC 114 *************975 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.10	7.5E-34	11	106	IPR011991	Winged helix-turn-helix DNA-binding domain
SMART	SM00415	1.1E-42	12	112	IPR000232	Heat shock factor (HSF)-type, DNA-binding
SuperFamily	SSF46785	4.62E-27	13	112	IPR011991	Winged helix-turn-helix DNA-binding domain
Pfam	PF00447	9.7E-30	16	112	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	5.5E-12	23	46	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	5.5E-12	61	73	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	5.5E-12	74	86	IPR000232	Heat shock factor (HSF)-type, DNA-binding

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 198 aa Download sequence Send to blast
MDQLSCSGKA RCPAPFLSKT YDLLEEAGDA GEGRNGKKIV SWNANGDGFV VWCTSEFADI 60 LLPKYFKHNN FSSFIRQLNT YGFKKTTSKR WEFQHEKFRK GQRHLLAEIS RKRCEPSVFP 120 TFLRASGASS GRWEQSDRRL LLMEENESLR KENLELQTQI QQLKALEMKL LDCLSGCVGT 180 ATGAPSSSHC IIRRHSF*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5d8k_B	1e-19	12	112	2	105	Heat shock factor protein 2
5d8l_B	1e-19	12	112	2	105	Heat shock factor protein 2
5d8l_D	1e-19	12	112	2	105	Heat shock factor protein 2
5d8l_F	1e-19	12	112	2	105	Heat shock factor protein 2
5d8l_H	1e-19	12	112	2	105	Heat shock factor protein 2
5hdk_A	9e-20	12	112	7	110	Heat shock factor protein 2
5hdk_B	9e-20	12	112	7	110	Heat shock factor protein 2
5hdk_C	9e-20	12	112	7	110	Heat shock factor protein 2
5hdk_D	9e-20	12	112	7	110	Heat shock factor protein 2
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_007212104.1	1e-78	heat stress transcription factor B-2a
TrEMBL	A0A314ZQ47	1e-77	A0A314ZQ47_PRUYE; Heat stress transcription factor B-2a
STRING	POPTR_0004s04260.1	6e-78	(Populus trichocarpa)
STRING	EMJ13303	4e-78	(Prunus persica)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G62020.1	2e-39	heat shock transcription factor B2A

Link Out ? help Back to Top
Phytozome	Kalax.0164s0077.1.p