PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Kalax.0164s0065.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
|
||||||||
Family | ERF | ||||||||
Protein Properties | Length: 230aa MW: 23935.9 Da PI: 10.1544 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 65 | 1.6e-20 | 18 | 67 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 +++GVr ++ +gr++AeIrdp++ + r++lg+f+taeeAa+a++aa+ +++g Kalax.0164s0065.1.p 18 HFRGVRKRP-WGRYAAEIRDPTK---KSRVWLGTFDTAEEAARAYDAAAIEFRG 67 69*******.**********864...6************************998 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 3.93E-19 | 17 | 75 | No hit | No description |
PROSITE profile | PS51032 | 24.302 | 18 | 75 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 2.2E-32 | 18 | 75 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 7.85E-23 | 18 | 76 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 5.7E-14 | 18 | 67 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.7E-39 | 18 | 81 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 4.6E-11 | 19 | 30 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 4.6E-11 | 41 | 57 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 230 aa Download sequence Send to blast |
MAPKTVEKKA AAGIKEAHFR GVRKRPWGRY AAEIRDPTKK SRVWLGTFDT AEEAARAYDA 60 AAIEFRGTKA KTNFPMPGGA SAATPHLSPS QSSTVESSSR ESHAPAVTSI LDLSLKTGSP 120 AVTPSAAYGG PIRFPFQHFQ LAAASPSLLP AANMFFFNPV ARSARPVTFR SYPNIQAAVT 180 VAAATGMNFN GPALSDSDSS SVVDASSPAS TAAVPDIDLN FPPPDTTAA* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 2e-22 | 15 | 76 | 2 | 64 | ATERF1 |
3gcc_A | 2e-22 | 15 | 76 | 2 | 64 | ATERF1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Acts as a transcriptional repressor. Binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways mediated by ethylene, that seems to depend on a protein kinase/phosphatase cascade, and to be influenced by methyl-jasmonate. May regulate other AtERFs (By similarity). {ECO:0000250, ECO:0000269|PubMed:10652129, ECO:0000269|PubMed:10792818, ECO:0000269|PubMed:12654868, ECO:0000269|PubMed:7756828, ECO:0000269|Ref.2}. |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: Strongly induced by ethephon (ethylene-releasing compound) in buds and to lower extent in leaves. Strongly induced by cycloheximide and mechanical stimuli. Wounding leads to a both local and systemical transient expression, independently of ethylene, and through a de-novo-protein-synthesis-independent regulation. Not influenced by methyl-jasmonate. Induction by purified xylanase from Trichoderma viride (TvX) and another elicitor from Phytophthora infestans (PiE), that appears to be mediated by a protein kinase cascade, and to be negatively regulated by protein phosphatases. {ECO:0000269|PubMed:10652129, ECO:0000269|PubMed:12090623, ECO:0000269|PubMed:7756828, ECO:0000269|Ref.2}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_026393964.1 | 9e-52 | ethylene-responsive transcription factor 4-like | ||||
Swissprot | Q40477 | 6e-41 | ERF4_TOBAC; Ethylene-responsive transcription factor 4 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G44210.1 | 3e-27 | erf domain protein 9 |
Link Out ? help Back to Top | |
---|---|
Phytozome | Kalax.0164s0065.1.p |
Publications ? help Back to Top | |||
---|---|---|---|
|