PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0164s0056.5.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family ARF
Protein Properties Length: 725aa    MW: 78964.5 Da    PI: 7.5508
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0164s0056.5.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B375.56.1e-24158259199
                          EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE CS
                   B3   1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkl 84 
                          f+k+lt sd++++g +++p++ ae++       ++ + s++l+ +d++gr+W++++iyr++++r++lt+GW+ Fv+ ++L +gD v+F +
  Kalax.0164s0056.5.p 158 FCKTLTASDTSTHGGFSVPRRAAEDCfppldyTLQRP-SQELVAKDLHGREWKFRHIYRGQPRRHLLTTGWSAFVNRKKLVSGDAVLFLR 246
                          99****************************9955544.569************************************************4 PP

                          -SSSEE..EEEEE-S CS
                   B3  85 dgrsefelvvkvfrk 99 
                              ++ l+++v+r+
  Kalax.0164s0056.5.p 247 G--GDGILRLGVRRA 259
                          3..677778888875 PP
2Auxin_resp104.21.6e-34284365182
           Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsL 82 
                          +++a+st+svF++ YnPr ++s+F+++ +k+ ++l +k+s GmR+km  eted++err++G v+gvsdldp+ Wp+SkW++L
  Kalax.0164s0056.5.p 284 VINAISTRSVFDISYNPRGTSSDFIIPHSKFTRSLVHKFSCGMRLKMCCETEDAAERRFTGAVTGVSDLDPIGWPGSKWKCL 365
                          5799*****************************************************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.96E-40154267IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.108.3E-39154261IPR015300DNA-binding pseudobarrel domain
CDDcd100178.60E-23156258No hitNo description
PfamPF023629.7E-22158259IPR003340B3 DNA binding domain
SMARTSM010191.0E-23158260IPR003340B3 DNA binding domain
PROSITE profilePS5086313.563158260IPR003340B3 DNA binding domain
PfamPF065075.0E-29285365IPR010525Auxin response factor
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 725 aa     Download sequence    Send to blast
MAATGRGLNL FDLNTAEEED AAAGGSLSPS PSPTSTCSGV VPGSTGCVAP SVCLELWHAC  60
VGPLVSLPKK NSLVVYFPQG QLECFGESPA VICGVPPHVF CRVLDVKLHA EVDSDEVCAQ  120
VFLIPVAQEQ LPQVDKTEVD GEDDDINCGS KSMARHMFCK TLTASDTSTH GGFSVPRRAA  180
EDCFPPLDYT LQRPSQELVA KDLHGREWKF RHIYRGQPRR HLLTTGWSAF VNRKKLVSGD  240
AVLFLRGGDG ILRLGVRRAA QLKEKPPFPP IFREQQSHGS FSAVINAIST RSVFDISYNP  300
RGTSSDFIIP HSKFTRSLVH KFSCGMRLKM CCETEDAAER RFTGAVTGVS DLDPIGWPGS  360
KWKCLLVEWD DSENNLHGGR VSPWEVEPAG FVVGCCMPAP SGSKRGRNGL PSTIHNLPIP  420
DGKGLPDFRE SLRFQKVLQG QEIMSLKPQN TQNHNLAESL SCYPGTDSSR IGASGNKISR  480
PYFGNPDFSF NNKGFGESQW FQRVLQGQEK TSNMPYGMIS CTSSHDELLG IFNGIALPNF  540
RRTALLHDSN SQFHAAKSSV PVSSPSSVLM FPQATSLVPN PCRVPGLLEG RGIGNQGQVS  600
PTRPYVGELP SSYIKDNFVM FESCIPRTQF NQQDFCGHGP RPALSGSQKL DPSCKNSCRL  660
FGISLTDKEH APNVADETIL KANQLNTGPA FCITERQFLA QHPTMALGRL QKFDSASDAI  720
TYGI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldv_A1e-1014638813354Auxin response factor 1
4ldw_A1e-1014638813354Auxin response factor 1
4ldw_B1e-1014638813354Auxin response factor 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010655464.10.0PREDICTED: auxin response factor 3
RefseqXP_019078171.10.0PREDICTED: auxin response factor 3
TrEMBLA0A2N9G8C10.0A0A2N9G8C1_FAGSY; Auxin response factor
STRINGVIT_10s0003g00420.t010.0(Vitis vinifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33860.11e-173ARF family protein