PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Kalax.0164s0056.2.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
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Family | ARF | ||||||||
Protein Properties | Length: 694aa MW: 75420.4 Da PI: 7.5629 | ||||||||
Description | ARF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 75.6 | 5.7e-24 | 158 | 259 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkl 84 f+k+lt sd++++g +++p++ ae++ ++ + s++l+ +d++gr+W++++iyr++++r++lt+GW+ Fv+ ++L +gD v+F + Kalax.0164s0056.2.p 158 FCKTLTASDTSTHGGFSVPRRAAEDCfppldyTLQRP-SQELVAKDLHGREWKFRHIYRGQPRRHLLTTGWSAFVNRKKLVSGDAVLFLR 246 99****************************9955544.569************************************************4 PP -SSSEE..EEEEE-S CS B3 85 dgrsefelvvkvfrk 99 ++ l+++v+r+ Kalax.0164s0056.2.p 247 G--GDGILRLGVRRA 259 3..677778888875 PP | |||||||
2 | Auxin_resp | 104.3 | 1.5e-34 | 284 | 365 | 1 | 82 |
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsL 82 +++a+st+svF++ YnPr ++s+F+++ +k+ ++l +k+s GmR+km eted++err++G v+gvsdldp+ Wp+SkW++L Kalax.0164s0056.2.p 284 VINAISTRSVFDISYNPRGTSSDFIIPHSKFTRSLVHKFSCGMRLKMCCETEDAAERRFTGAVTGVSDLDPIGWPGSKWKCL 365 5799*****************************************************************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 7.7E-39 | 154 | 261 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 1.83E-40 | 154 | 267 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 7.74E-23 | 156 | 258 | No hit | No description |
Pfam | PF02362 | 9.0E-22 | 158 | 259 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 1.0E-23 | 158 | 260 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 13.563 | 158 | 260 | IPR003340 | B3 DNA binding domain |
Pfam | PF06507 | 4.7E-29 | 285 | 365 | IPR010525 | Auxin response factor |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009725 | Biological Process | response to hormone | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 694 aa Download sequence Send to blast |
MAATGRGLNL FDLNTAEEED AAAGGSLSPS PSPTSTCSGV VPGSTGCVAP SVCLELWHAC 60 VGPLVSLPKK NSLVVYFPQG QLECFGESPA VICGVPPHVF CRVLDVKLHA EVDSDEVCAQ 120 VFLIPVAQEQ LPQVDKTEVD GEDDDINCGS KSMARHMFCK TLTASDTSTH GGFSVPRRAA 180 EDCFPPLDYT LQRPSQELVA KDLHGREWKF RHIYRGQPRR HLLTTGWSAF VNRKKLVSGD 240 AVLFLRGGDG ILRLGVRRAA QLKEKPPFPP IFREQQSHGS FSAVINAIST RSVFDISYNP 300 RGTSSDFIIP HSKFTRSLVH KFSCGMRLKM CCETEDAAER RFTGAVTGVS DLDPIGWPGS 360 KWKCLLVEWD DSENNLHGGR VSPWEVEPAG FVVGCCMPAP SGSKRGRNGL PSTIHNLPIP 420 DGKGLPDFRE SLRFQKVLQG QEIMSLKPQN TQNHNLAESL SCYPGTDSSR IGASGNKISR 480 PYFGNPDFSF NNKGFGESQW FQRVLQGQEK TSNMPYGMIS CTSSHDELLG IFNGIALPNF 540 RRTALLHDSN SQFHAAKSSV PVSSPSSVLM FPQATSLVPN PCRVPGLLEG RGIGNQGQFN 600 QQDFCGHGPR PALSGSQKLD PSCKNSCRLF GISLTDKEHA PNVADETILK ANQLNTGPAF 660 CITERQFLAQ HPTMALGRLQ KFDSASDAIT YGI* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4ldv_A | 1e-101 | 46 | 388 | 13 | 354 | Auxin response factor 1 |
4ldw_A | 1e-101 | 46 | 388 | 13 | 354 | Auxin response factor 1 |
4ldw_B | 1e-101 | 46 | 388 | 13 | 354 | Auxin response factor 1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). | |||||
UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Could act as transcriptional activator or repressor. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. Involved in the establishment or elaboration of tissue patterning during gynoecial development. {ECO:0000269|PubMed:10952886, ECO:0000269|PubMed:12036261}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By auxin under dark condition. {ECO:0000269|PubMed:17408882}. | |||||
UniProt | INDUCTION: Negatively regulated by AHL21/GIK. {ECO:0000269|PubMed:19956801}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010655464.1 | 0.0 | PREDICTED: auxin response factor 3 | ||||
Refseq | XP_019078171.1 | 0.0 | PREDICTED: auxin response factor 3 | ||||
Swissprot | O23661 | 1e-172 | ARFC_ARATH; Auxin response factor 3 | ||||
Swissprot | Q0JKI9 | 1e-171 | ARFB_ORYSJ; Auxin response factor 2 | ||||
TrEMBL | A0A2N9G8C1 | 0.0 | A0A2N9G8C1_FAGSY; Auxin response factor | ||||
TrEMBL | F6HM45 | 0.0 | F6HM45_VITVI; Auxin response factor | ||||
STRING | VIT_10s0003g00420.t01 | 0.0 | (Vitis vinifera) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G33860.1 | 1e-174 | ARF family protein |
Link Out ? help Back to Top | |
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Phytozome | Kalax.0164s0056.2.p |