PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0159s0003.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family GATA
Protein Properties Length: 322aa    MW: 35202.1 Da    PI: 4.7465
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0159s0003.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA58.31e-18242275134
                 GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 
                          Cs+C++ kTp+WR gp+g ktLCnaCG+++++ +
  Kalax.0159s0003.1.p 242 CSHCQVQKTPQWRAGPEGAKTLCNACGVRFKSGR 275
                          *******************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0169926.6E-7529318IPR016679Transcription factor, GATA, plant
PROSITE profilePS5011412.334236272IPR000679Zinc finger, GATA-type
SMARTSM004011.9E-16236290IPR000679Zinc finger, GATA-type
SuperFamilySSF577164.13E-14237299No hitNo description
Gene3DG3DSA:3.30.50.103.7E-15239273IPR013088Zinc finger, NHR/GATA-type
CDDcd002022.40E-14241290No hitNo description
PfamPF003201.2E-16242275IPR000679Zinc finger, GATA-type
PROSITE patternPS003440242267IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 322 aa     Download sequence    Send to blast
MEYCIEARAL KPSLRREIDV RPNQSQAVAA VDEFVYETEV HGGGFVEDFL IDDLLDFPEK  60
EVEDGDEEEE EEEEKDSLSD CSAELETDEN GYSTVTGDFL SLPDDASGLA VPQDDLADLE  120
WVSRFVDDTM PEFPPLYPTK SGVSGRKPSV SSSLPVQLNQ DMHIKPLIIP AKPRTKRQRI  180
GRVWSLNSST ASESSTTTSS SLSSPSSIIS SPVQFGFSGP LAKKQKTKPD PAQPADPTGR  240
RCSHCQVQKT PQWRAGPEGA KTLCNACGVR FKSGRLYPEY RPACSPTFRG DVHSNSHRKV  300
LEMRKKKEAG AAGSGLAVQS Y*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008236855.18e-79PREDICTED: GATA transcription factor 5-like
RefseqXP_008236856.18e-79PREDICTED: GATA transcription factor 5-like
STRINGXP_008236855.13e-78(Prunus mume)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36240.11e-49GATA transcription factor 7