PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Kalax.0158s0002.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
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Family | MYB | ||||||||
Protein Properties | Length: 286aa MW: 31662.5 Da PI: 8.5815 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 50.4 | 5.2e-16 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+WT+ Ed ll ++++ +G g+W++ ++ g+ R++k+c++rw +yl Kalax.0158s0002.1.p 14 RGPWTPKEDSLLTNYINSHGEGHWRSLPKQAGLLRCGKSCRLRWMNYL 61 89******************************99************97 PP | |||||||
2 | Myb_DNA-binding | 50.9 | 3.7e-16 | 67 | 110 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rg+ T++Ed+l+++++++lG++ W++Ia +++ gRt++++k++w++ Kalax.0158s0002.1.p 67 RGNITAQEDDLIIRLHALLGNR-WSLIAGRLP-GRTDNEIKNYWNT 110 7999******************.*********.***********97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 14.66 | 9 | 61 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.03E-29 | 11 | 108 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 8.4E-12 | 13 | 63 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 4.4E-14 | 14 | 61 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 7.7E-24 | 15 | 68 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.03E-9 | 16 | 61 | No hit | No description |
PROSITE profile | PS51294 | 26.257 | 62 | 116 | IPR017930 | Myb domain |
SMART | SM00717 | 1.3E-15 | 66 | 114 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.5E-14 | 67 | 110 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 8.8E-26 | 69 | 116 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.29E-11 | 71 | 112 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 286 aa Download sequence Send to blast |
MGRAPCCSKV GLHRGPWTPK EDSLLTNYIN SHGEGHWRSL PKQAGLLRCG KSCRLRWMNY 60 LRPDIKRGNI TAQEDDLIIR LHALLGNRWS LIAGRLPGRT DNEIKNYWNT RLSKKIPSPP 120 KNTKRPKKPS PLVPATASKF LAEPPVEMES KHMIHQPKAV RIGPLNRNVS GFVLTSSESN 180 TSSVSGENNM SSNYNSNSSE GEVDHHANFA AAENGSAPWS TGDMYNSGIY VDDGTKAPSF 240 SDQLLGYGDE GNNTVWEKLY DEYLQLTNAG YGVELDQSET QHLLI* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 1e-25 | 12 | 118 | 5 | 110 | B-MYB |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001295449.1 | 2e-83 | transcriptional activator Myb | ||||
TrEMBL | A0A0A8WJ38 | 5e-82 | A0A0A8WJ38_FRAVE; Transcription factor MYB 12 | ||||
STRING | XP_004306648.1 | 8e-83 | (Fragaria vesca) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G23250.1 | 3e-64 | myb domain protein 15 |
Link Out ? help Back to Top | |
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Phytozome | Kalax.0158s0002.1.p |