PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0157s0054.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family GRAS
Protein Properties Length: 444aa    MW: 49281.8 Da    PI: 7.5463
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0157s0054.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS357.32.3e-109674421374
                 GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetsekn.....sseelaalklfs 85 
                          lv+lL++cAeav+ +d++ a+alL++l+ +a   g+++qR+a++f+++La r++  ++  ++ +++ +t         s++++  l+l +
  Kalax.0157s0054.1.p  67 LVQLLIACAEAVACRDKSHASALLSELRAHAVVFGSSFQRVASCFVQGLADRMTLVQPLGSNGFRSPATMLGLmegveSDKKAEGLSLVY 156
                          689***************************************************9666666666555544322556556666666777** PP

                 GRAS  86 evsPilkfshltaNqaIleavegeervHiiDfdisqGl....QWpaLlqaLasRpegpp..slRiTgvgspesgskeeleetgerLakfA 169
                          e++P ++f+h++aN+ Ilea+ege+ vH++D++++ Gl    QW  L+++L++R+ gpp  +l++T++g     ++e+l+++g  L+ +A
  Kalax.0157s0054.1.p 157 ELCPQIQFGHFVANSSILEAFEGESSVHVVDLGMTLGLpgghQWRQLIHSLTNRATGPPkgRLKVTAIGL----HAEKLQAMGCELEVYA 242
                          ********************************9997644444*************9999889********....9*************** PP

                 GRAS 170 eelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerfle 259
                          ++++v++ f+  + k le++++e++++ ++E+l+Vn+++qlh +++es    +   +vL+++ +l+Pk +v+veq+++hn++ Fl rf+e
  Kalax.0157s0054.1.p 243 HSMNVNMVFSG-IGKCLENIRPEDFDIVEDEVLVVNSIFQLHCVVKESRGALN---SVLRIIHKLQPKTLVLVEQDSNHNGPFFLGRFME 328
                          ***********.7********************************88877777...8********************************* PP

                 GRAS 260 aleyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdg 348
                          al+yysa+fdsl+a lp+ +  r+k+E+++++++i+n+v+ceg er+erhe++ +Wr+r+++aGF+pvp++  + +qak  +++vk  dg
  Kalax.0157s0054.1.p 329 ALHYYSAIFDSLDAMLPKYDTRRAKMEQFYFAEQIKNIVSCEGPERVERHERVDQWRRRMSRAGFQPVPIK--MISQAKQWMARVKlCDG 416
                          *********************************************************************96..6899*********99** PP

                 GRAS 349 yrveeesgslvlgWkdrpLvsvSaWr 374
                          +++ ee+g+l+lgWk++p+v++S+W+
  Kalax.0157s0054.1.p 417 HTIVEEKGCLILGWKSKPIVAASCWK 442
                          *************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098556.81541423IPR005202Transcription factor GRAS
PfamPF035148.0E-10767442IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 444 aa     Download sequence    Send to blast
MSTGSLVRSS SVTSLPRLHF RDHIWTYTQR YLAAEAVEEA VSSFEAENGM SGGGCQDHQG  60
NKDGMRLVQL LIACAEAVAC RDKSHASALL SELRAHAVVF GSSFQRVASC FVQGLADRMT  120
LVQPLGSNGF RSPATMLGLM EGVESDKKAE GLSLVYELCP QIQFGHFVAN SSILEAFEGE  180
SSVHVVDLGM TLGLPGGHQW RQLIHSLTNR ATGPPKGRLK VTAIGLHAEK LQAMGCELEV  240
YAHSMNVNMV FSGIGKCLEN IRPEDFDIVE DEVLVVNSIF QLHCVVKESR GALNSVLRII  300
HKLQPKTLVL VEQDSNHNGP FFLGRFMEAL HYYSAIFDSL DAMLPKYDTR RAKMEQFYFA  360
EQIKNIVSCE GPERVERHER VDQWRRRMSR AGFQPVPIKM ISQAKQWMAR VKLCDGHTIV  420
EEKGCLILGW KSKPIVAASC WKC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A8e-575644112378Protein SCARECROW
5b3h_A6e-575644111377Protein SCARECROW
5b3h_D6e-575644111377Protein SCARECROW
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027121976.10.0DELLA protein RGL1-like
TrEMBLA0A192ADG00.0A0A192ADG0_PYRPY; DELLA protein RGL2
STRINGXP_009359535.10.0(Pyrus x bretschneideri)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66350.11e-81RGA-like 1