PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0154s0015.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family MYB
Protein Properties Length: 272aa    MW: 30411.2 Da    PI: 6.2515
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0154s0015.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding47.54.2e-151461148
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                         +g+WT+eEd  l+++ + +G g W+ +++  g++R++k+c++rw++yl
  Kalax.0154s0015.1.p 14 KGAWTAEEDRMLAEYMEAHGDGKWRNVPNVTGLKRCGKSCRLRWLNYL 61
                         79********************************************97 PP
2Myb_DNA-binding52.51.1e-1667111147
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
      Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                          rg+ +++E++l+v+++k+lG++ W++Ia +++ gRt++++k++w++ 
  Kalax.0154s0015.1.p  67 RGNISPDEEDLIVRLHKLLGNR-WSLIAGRLP-GRTDNEVKNYWNTN 111
                          7899******************.*********.***********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.9E-22564IPR009057Homeodomain-like
PROSITE profilePS5129416.74961IPR017930Myb domain
SuperFamilySSF466896.24E-2912108IPR009057Homeodomain-like
SMARTSM007179.1E-131363IPR001005SANT/Myb domain
PfamPF002492.5E-141461IPR001005SANT/Myb domain
CDDcd001673.49E-91661No hitNo description
PROSITE profilePS5129425.55462116IPR017930Myb domain
Gene3DG3DSA:1.10.10.605.3E-2465116IPR009057Homeodomain-like
SMARTSM007179.1E-1666114IPR001005SANT/Myb domain
PfamPF002498.4E-1567112IPR001005SANT/Myb domain
CDDcd001672.99E-1171112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 272 aa     Download sequence    Send to blast
MGRRPCCVKE GLNKGAWTAE EDRMLAEYME AHGDGKWRNV PNVTGLKRCG KSCRLRWLNY  60
LRPDIKRGNI SPDEEDLIVR LHKLLGNRWS LIAGRLPGRT DNEVKNYWNT NLSKKIGSSN  120
KNSTKKKQQQ PPFHVAQQTS MNHQVLLEEE KSPLVVTASE DLLKNSNYML NTNCSQKVGS  180
GSNEDCLTLE EIIEFAEFGG GKTQQNNIVV GADAGSSSTV QHDSFCLLGP ESNLAWPGHK  240
DGQWDDWLLD AMAADAEDWL PDCDRSMFGI F*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C6e-271211625128MYB TRANSFORMING PROTEIN
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024184383.11e-70myb-related protein 308-like
TrEMBLA0A2P6RYK12e-69A0A2P6RYK1_ROSCH; Putative transcription factor MYB-HB-like family
STRINGXP_010047497.14e-69(Eucalyptus grandis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G22640.15e-57myb domain protein 3