PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0153s0030.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family MYB
Protein Properties Length: 328aa    MW: 36698.1 Da    PI: 4.6905
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0153s0030.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding51.72e-161966148
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                         +g+WT +Ede+l + ++++G ++W++ +r  g+ R++k+c++rw +yl
  Kalax.0153s0030.1.p 19 KGPWTSDEDEILTNHINLHGHPNWRALPRLAGLARCGKSCRLRWTNYL 66
                         79********************************************97 PP
2Myb_DNA-binding50.64.5e-1672117148
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                          rg++T eE+e++++ +++lG++ W++Ia++++ gRt++++k+ w+++l
  Kalax.0153s0030.1.p  72 RGNFTREEEEIIIQSHQLLGNR-WSAIAAKLP-GRTDNEIKNVWHTHL 117
                          89********************.*********.************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129413.1941466IPR017930Myb domain
SuperFamilySSF466892.23E-2816113IPR009057Homeodomain-like
SMARTSM007173.8E-111868IPR001005SANT/Myb domain
PfamPF002493.4E-131966IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.8E-212073IPR009057Homeodomain-like
CDDcd001675.54E-102166No hitNo description
PROSITE profilePS5129424.05467121IPR017930Myb domain
SMARTSM007171.6E-1471119IPR001005SANT/Myb domain
PfamPF002492.5E-1472117IPR001005SANT/Myb domain
CDDcd001674.03E-1174117No hitNo description
Gene3DG3DSA:1.10.10.607.9E-2674121IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 328 aa     Download sequence    Send to blast
MVRSPSRSTS KHAVAGLKKG PWTSDEDEIL TNHINLHGHP NWRALPRLAG LARCGKSCRL  60
RWTNYLQPGI KRGNFTREEE EIIIQSHQLL GNRWSAIAAK LPGRTDNEIK NVWHTHLKKK  120
LLKRNEPQGS AATTDDSSNN SDFIIVDESI FHQAWDDHSR QSMDPINQHA HADQTENNNN  180
PNDAPACNTL YVPSFSPPQE SYSEASYNNY NEVPSPEEFP ETDETFWSDV LSSDFDNYSG  240
SGSSSIENCY PCYQQQPVSG FPLLVSDSNN AVNEMDPKEE ITTASNSFAS NVEANNVSGS  300
KTVVEDVDDF WFDVLFRAGE HPVLLDM*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C3e-261712125128MYB TRANSFORMING PROTEIN
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G06180.11e-62myb domain protein 13