PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Kalax.0150s0017.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
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Family | NAC | ||||||||
Protein Properties | Length: 374aa MW: 41060.2 Da PI: 7.8481 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 178.7 | 1.5e-55 | 52 | 180 | 1 | 129 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdk 90 lppGfrFhPtdeel+++yL kkv ++++++ ++i+evd++k+ePw+Lp+k++ +ekewyfFs rd+ky+tg r+nrat++gyWkatgkd+ Kalax.0150s0017.1.p 52 LPPGFRFHPTDEELITYYLIKKVLDSNFTA-RAIAEVDLNKCEPWELPEKARMGEKEWYFFSLRDRKYPTGLRTNRATDAGYWKATGKDR 140 79*************************999.89***************99999************************************* PP NAM 91 evlsk.kgelvglkktLvfykgrapkgektdWvmheyrle 129 e++s+ + +lvg+kktLvfy+grapkgek++Wvmheyrle Kalax.0150s0017.1.p 141 EICSSkTLSLVGMKKTLVFYRGRAPKGEKSNWVMHEYRLE 180 ***9745567****************************85 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 7.19E-63 | 48 | 204 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 59.765 | 52 | 204 | IPR003441 | NAC domain |
Pfam | PF02365 | 2.7E-28 | 53 | 179 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 374 aa Download sequence Send to blast |
MMDMMMMMKM MGYSSNQNNY HLSHQHTHGD SNSTACTMVG ADIISSSSSA TLPPGFRFHP 60 TDEELITYYL IKKVLDSNFT ARAIAEVDLN KCEPWELPEK ARMGEKEWYF FSLRDRKYPT 120 GLRTNRATDA GYWKATGKDR EICSSKTLSL VGMKKTLVFY RGRAPKGEKS NWVMHEYRLE 180 GKFAYHFLSR SSKDEWVISR VFQKTGVGLV STSTTSTTGN NQNPPNRHHQ EVSSASSASL 240 PPLLNPDISS GESSAAKTAA AQQQHVSCFS TMAAHPAASY ISSDFPPAAV EGGAAAAAAA 300 AYNCVFPSLR SLQENLNFPN FFFPAPSSCV HGGIGEMMEI SAGGSWQQQL LGEKRTIVGG 360 TELDCLWTSN YSQ* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 5e-53 | 48 | 204 | 13 | 165 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 5e-53 | 48 | 204 | 13 | 165 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 5e-53 | 48 | 204 | 13 | 165 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 5e-53 | 48 | 204 | 13 | 165 | NO APICAL MERISTEM PROTEIN |
3swm_A | 6e-53 | 48 | 204 | 16 | 168 | NAC domain-containing protein 19 |
3swm_B | 6e-53 | 48 | 204 | 16 | 168 | NAC domain-containing protein 19 |
3swm_C | 6e-53 | 48 | 204 | 16 | 168 | NAC domain-containing protein 19 |
3swm_D | 6e-53 | 48 | 204 | 16 | 168 | NAC domain-containing protein 19 |
3swp_A | 6e-53 | 48 | 204 | 16 | 168 | NAC domain-containing protein 19 |
3swp_B | 6e-53 | 48 | 204 | 16 | 168 | NAC domain-containing protein 19 |
3swp_C | 6e-53 | 48 | 204 | 16 | 168 | NAC domain-containing protein 19 |
3swp_D | 6e-53 | 48 | 204 | 16 | 168 | NAC domain-containing protein 19 |
4dul_A | 5e-53 | 48 | 204 | 13 | 165 | NAC domain-containing protein 19 |
4dul_B | 5e-53 | 48 | 204 | 13 | 165 | NAC domain-containing protein 19 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator of STM and KNAT6. Involved in molecular mechanisms regulating shoot apical meristem (SAM) formation during embryogenesis and organ separation. Required for the fusion of septa of gynoecia along the length of the ovaries. Activates the shoot formation in callus in a STM-dependent manner. Controls leaf margin development and required for leaf serration. Involved in axillary meristem initiation and separation of the meristem from the main stem. Regulates the phyllotaxy throughout the plant development. Seems to act as an inhibitor of cell division. {ECO:0000269|PubMed:10079219, ECO:0000269|PubMed:10750709, ECO:0000269|PubMed:12163400, ECO:0000269|PubMed:12492830, ECO:0000269|PubMed:12610213, ECO:0000269|PubMed:15202996, ECO:0000269|PubMed:15294871, ECO:0000269|PubMed:15500463, ECO:0000269|PubMed:15723790, ECO:0000269|PubMed:16798887, ECO:0000269|PubMed:17098808, ECO:0000269|PubMed:17122068, ECO:0000269|PubMed:17251269, ECO:0000269|PubMed:17287247, ECO:0000269|PubMed:9212461}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By BRM and SYD, at the chromatin level, and conferring a very specific spatial expression pattern. Precise spatial regulation by post-transcriptional repression directed by the microRNA miR164. {ECO:0000269|PubMed:15202996, ECO:0000269|PubMed:15294871, ECO:0000269|PubMed:15723790, ECO:0000269|PubMed:16854978, ECO:0000269|PubMed:17251269, ECO:0000269|PubMed:17287247}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016579532.1 | 1e-127 | PREDICTED: protein CUP-SHAPED COTYLEDON 2-like | ||||
Refseq | XP_027356654.1 | 1e-127 | protein CUP-SHAPED COTYLEDON 2-like | ||||
Swissprot | O04017 | 1e-103 | NAC98_ARATH; Protein CUP-SHAPED COTYLEDON 2 | ||||
TrEMBL | A0A1U8H7V7 | 1e-126 | A0A1U8H7V7_CAPAN; protein CUP-SHAPED COTYLEDON 2-like | ||||
STRING | XP_008783143.1 | 1e-126 | (Phoenix dactylifera) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G53950.1 | 1e-100 | NAC family protein |
Link Out ? help Back to Top | |
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Phytozome | Kalax.0150s0017.1.p |