PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Kalax.0148s0048.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
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Family | MYB | ||||||||
Protein Properties | Length: 225aa MW: 26064.2 Da PI: 7.7576 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 56.4 | 6.9e-18 | 22 | 69 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT eEd++l+++++ +G g W++ a+ g++Rt+k+c++rw++yl Kalax.0148s0048.1.p 22 KGPWTMEEDLILINYIANHGEGIWNSLAKSAGLKRTGKSCRLRWLNYL 69 79********************************************97 PP | |||||||
2 | Myb_DNA-binding | 54.1 | 3.5e-17 | 75 | 118 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rg+ T+eE+ l++++++++G++ W++Ia++++ gRt++++k++w++ Kalax.0148s0048.1.p 75 RGNITPEEQMLILQLHAKWGNR-WSKIAKHLP-GRTDNEIKNFWRT 118 7999******************.*********.***********96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 2.3E-23 | 16 | 72 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 17.009 | 17 | 69 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 3.59E-30 | 19 | 116 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 3.9E-13 | 21 | 71 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 7.0E-16 | 22 | 69 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 3.21E-10 | 24 | 69 | No hit | No description |
PROSITE profile | PS51294 | 24.291 | 70 | 124 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.0E-24 | 73 | 123 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 3.6E-16 | 74 | 122 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 4.3E-16 | 75 | 118 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 5.95E-13 | 79 | 118 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009740 | Biological Process | gibberellic acid mediated signaling pathway | ||||
GO:0009867 | Biological Process | jasmonic acid mediated signaling pathway | ||||
GO:0080086 | Biological Process | stamen filament development | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 225 aa Download sequence Send to blast |
MDGKRPYFLT SCSHSVDPEV RKGPWTMEED LILINYIANH GEGIWNSLAK SAGLKRTGKS 60 CRLRWLNYLR PDVRRGNITP EEQMLILQLH AKWGNRWSKI AKHLPGRTDN EIKNFWRTRI 120 QKYINKQDEN HHHQQQDDTQ LMTTCKQVSQ ASSSQMSTTT TAASSDLNAF DNHHHHQAYS 180 PQQLFPYPLE PYPNGGIIMP DDLNDSMWNN MEEFWSINAV STHY* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h8a_C | 2e-27 | 10 | 124 | 11 | 128 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. {ECO:0000305}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_028772296.1 | 1e-81 | myb-related protein 305 | ||||
Swissprot | P81391 | 5e-77 | MYB05_ANTMA; Myb-related protein 305 | ||||
TrEMBL | A0A151QWW3 | 8e-79 | A0A151QWW3_CAJCA; Myb-related protein 305 family | ||||
TrEMBL | R9QBI0 | 9e-79 | R9QBI0_GOSHI; MYB24 | ||||
STRING | Gorai.001G263200.1 | 4e-78 | (Gossypium raimondii) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G40350.1 | 2e-74 | myb domain protein 24 |
Link Out ? help Back to Top | |
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Phytozome | Kalax.0148s0048.1.p |
Publications ? help Back to Top | |||
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