PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Kalax.0139s0061.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
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Family | NAC | ||||||||
Protein Properties | Length: 556aa MW: 61858 Da PI: 4.6398 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 164.5 | 3.8e-51 | 11 | 137 | 2 | 128 |
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkd 89 +pGfrFhPtdeelv++yLk+kv g+ +++ ++i+e+d+yk+ePwdLp k ++k+++ ewyfFs dkky +g+++nrat++gyWk+tgkd Kalax.0139s0061.1.p 11 APGFRFHPTDEELVKFYLKRKVCGRAFRF-DAIAEADVYKCEPWDLPdKsALKSRDLEWYFFSGLDKKYGHGSKTNRATERGYWKTTGKD 99 69*************************99.99**************96346667777********************************* PP NAM 90 kevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 ++v++ + +vg+kktLv++ grap+ge+t+Wvmheyrl Kalax.0139s0061.1.p 100 RPVHN-NLVVVGMKKTLVYHIGRAPRGERTNWVMHEYRL 137 ****9.999****************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51005 | 56.092 | 10 | 160 | IPR003441 | NAC domain |
SuperFamily | SSF101941 | 5.1E-60 | 10 | 160 | IPR003441 | NAC domain |
Pfam | PF02365 | 5.1E-27 | 12 | 137 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 556 aa Download sequence Send to blast |
MGGRDPANFI APGFRFHPTD EELVKFYLKR KVCGRAFRFD AIAEADVYKC EPWDLPDKSA 60 LKSRDLEWYF FSGLDKKYGH GSKTNRATER GYWKTTGKDR PVHNNLVVVG MKKTLVYHIG 120 RAPRGERTNW VMHEYRLADS ELEKAGVSQA SFVLCRIFQK SGPGPKNGEQ HGAPFIEEEW 180 EDEDEVLVTG GEQSQDEALI ADGAYLETDD LDQLIDFNVS PGNYSLQTNY CYGGSSNQFD 240 VSRELSEEGQ KPSVGARENL NQSKLPVTEQ QCFGELKPYE VEENPPMADY FAKPDEIASR 300 DVNYLLDEPY LNGNYDEVHR EGLYLETDDL LTPIEADPSS FDMLHEYLAD FDENDEIFYM 360 PPNNSKAEAE THIPLDIVNE QAEGQTQKMV MASKHLVNAR GGDDGIASSN QNCTKFGSGS 420 KNPVAEHAKC LLESIPAPPA FAAEFPSKDA ALRLASAMQS QNSVNVVANI MHPRNTSTAN 480 NGISWSFDKN GKVQLIFSLS VGQGSGRLDS AACLDGYLSS KSKSATWRCW IYLTLFWVSI 540 LVISMKIGTC VVDAK* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 7e-45 | 10 | 160 | 17 | 165 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 7e-45 | 10 | 160 | 17 | 165 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 7e-45 | 10 | 160 | 17 | 165 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 7e-45 | 10 | 160 | 17 | 165 | NO APICAL MERISTEM PROTEIN |
3swm_A | 7e-45 | 10 | 160 | 20 | 168 | NAC domain-containing protein 19 |
3swm_B | 7e-45 | 10 | 160 | 20 | 168 | NAC domain-containing protein 19 |
3swm_C | 7e-45 | 10 | 160 | 20 | 168 | NAC domain-containing protein 19 |
3swm_D | 7e-45 | 10 | 160 | 20 | 168 | NAC domain-containing protein 19 |
3swp_A | 7e-45 | 10 | 160 | 20 | 168 | NAC domain-containing protein 19 |
3swp_B | 7e-45 | 10 | 160 | 20 | 168 | NAC domain-containing protein 19 |
3swp_C | 7e-45 | 10 | 160 | 20 | 168 | NAC domain-containing protein 19 |
3swp_D | 7e-45 | 10 | 160 | 20 | 168 | NAC domain-containing protein 19 |
4dul_A | 7e-45 | 10 | 160 | 17 | 165 | NAC domain-containing protein 19 |
4dul_B | 7e-45 | 10 | 160 | 17 | 165 | NAC domain-containing protein 19 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011031618.1 | 0.0 | PREDICTED: NAC domain-containing protein 78-like isoform X1 | ||||
TrEMBL | A0A2I4KK98 | 1e-172 | A0A2I4KK98_POPTR; NAC family protein | ||||
STRING | POPTR_0010s23650.1 | 1e-172 | (Populus trichocarpa) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G04410.1 | 1e-121 | NAC domain containing protein 2 |
Link Out ? help Back to Top | |
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Phytozome | Kalax.0139s0061.1.p |