PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0138s0005.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family WRKY
Protein Properties Length: 288aa    MW: 31713.2 Da    PI: 5.7248
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0138s0005.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY672.8e-21120181258
                          --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-S....SSTTEEEEEEES--SS CS
                 WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversa....edpkvveitYegeHnh 58 
                          dDg++WrKYGqK++ ++++pr+Y+rCts+ +C++ k+v++ +    +d  + +i+ +g H++
  Kalax.0138s0005.1.p 120 DDGHAWRKYGQKPILNAKHPRNYFRCTSKpDCQALKRVQKMDdnddDDRPMYKIIHTGLHTC 181
                          8***************************99*********97621114677999999999998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.804.1E-22109183IPR003657WRKY domain
SuperFamilySSF1182901.57E-20112182IPR003657WRKY domain
PROSITE profilePS5081115.973114159IPR003657WRKY domain
SMARTSM007741.8E-27119183IPR003657WRKY domain
PfamPF031063.5E-21120181IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 288 aa     Download sequence    Send to blast
MNPCGTGRCR SDDRELFRVG DELRRGRQAA TDLLGLMRQQ EYLSAAANAT SLDPALGLAM  60
KIADSFSNSL SMLGCQDPAA MGGGSSESNN KRSSSSSGGR KRNKPRKADS WTEVTSALID  120
DGHAWRKYGQ KPILNAKHPR NYFRCTSKPD CQALKRVQKM DDNDDDDRPM YKIIHTGLHT  180
CLKPLNPSNV FGDMDSSIYL NFEISEQRNN KEPSDSLEIL ATLSPEFTVR EVSKDNQTGS  240
SSTPLSENAE TDTSPSENAQ WCFNDLDYLI GSLEFNEHAL SGAALRF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A9e-16119181868OsWRKY45
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40750.18e-17WRKY DNA-binding protein 54