PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Kalax.0137s0045.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
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Family | B3 | ||||||||
Protein Properties | Length: 202aa MW: 22850 Da PI: 9.3395 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 40.8 | 4.1e-13 | 124 | 194 | 20 | 93 |
HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..E CS B3 20 kkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelv 93 k+ +++h ++ke ++ +tlede+g++ +k+ +++++ l++GW++F+ +++L +gD +vF+l++ ++f+ + Kalax.0137s0045.1.p 124 KPMVQSHaHMSKEDEMNITLEDEDGNESPIKYLVDRTG----LSGGWRGFALDHELVDGDALVFQLIRPTKFKSL 194 5566677756678899****************777777....************************998887655 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 7.65E-14 | 116 | 191 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 2.14E-16 | 120 | 192 | No hit | No description |
SMART | SM01019 | 7.6E-8 | 122 | 198 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 5.2E-11 | 124 | 192 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 1.1E-10 | 130 | 192 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 8.614 | 141 | 199 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 202 aa Download sequence Send to blast |
MVVSATSNYE ELRRQRLEEN KKRMEEVSLL NLSKFLSAAT PKSSPAKHRK PKSARKEVDL 60 SAVRRSRRMA GKSRPDYKEG MRLMLSRGDL LNHVYASDES RVSAVKRAEQ LESELGFEYP 120 CFVKPMVQSH AHMSKEDEMN ITLEDEDGNE SPIKYLVDRT GLSGGWRGFA LDHELVDGDA 180 LVFQLIRPTK FKSLSSVSDP F* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_019074156.1 | 2e-74 | PREDICTED: B3 domain-containing protein At3g19184 isoform X2 | ||||
Swissprot | Q1G3M3 | 2e-47 | Y3918_ARATH; B3 domain-containing protein At3g19184 | ||||
TrEMBL | F6HQC1 | 3e-73 | F6HQC1_VITVI; Uncharacterized protein | ||||
STRING | VIT_03s0063g00620.t01 | 6e-74 | (Vitis vinifera) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G19184.1 | 8e-50 | B3 family protein |
Link Out ? help Back to Top | |
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Phytozome | Kalax.0137s0045.1.p |
Publications ? help Back to Top | |||
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