PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0136s0116.2.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family WRKY
Protein Properties Length: 463aa    MW: 51036 Da    PI: 7.9018
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0136s0116.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY104.46.3e-33207264260
                          --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS
                 WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 
                          dDgynWrKYGqK+vk+se+prsYY+Ct++gCp+kkkvers  d++++ei+Y+g+Hnh+k
  Kalax.0136s0116.2.p 207 DDGYNWRKYGQKQVKSSENPRSYYKCTFPGCPTKKKVERSL-DGEITEIVYKGSHNHPK 264
                          8****************************************.***************85 PP
2WRKY104.84.7e-33375433159
                          ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                 WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                          ldDgy+WrKYGqK+vkg+++prsYY+Cts+gC+v+k+ver+++d ++v++tYeg+Hnh+
  Kalax.0136s0116.2.p 375 LDDGYRWRKYGQKVVKGNPNPRSYYKCTSQGCTVRKHVERASHDLRAVITTYEGKHNHD 433
                          59********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.804.2E-29193265IPR003657WRKY domain
SuperFamilySSF1182901.57E-25200265IPR003657WRKY domain
PROSITE profilePS5081123.87201265IPR003657WRKY domain
SMARTSM007746.1E-36206264IPR003657WRKY domain
PfamPF031063.0E-25207263IPR003657WRKY domain
Gene3DG3DSA:2.20.25.804.6E-37360435IPR003657WRKY domain
SuperFamilySSF1182903.66E-29367435IPR003657WRKY domain
PROSITE profilePS5081138.871370435IPR003657WRKY domain
SMARTSM007741.4E-38375434IPR003657WRKY domain
PfamPF031062.8E-25376433IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 463 aa     Download sequence    Send to blast
MAAASGSLDT SANSPFSFST SFMNSSFSDL LNFPAAVTVE DDSSLLLNGS VNRGVPKFKS  60
LHPPSLLPVS PPPTSPSSYF AFPPGLSPSD LLDSPVLLSS SDLLQSPTTG SFPAALSYRW  120
GTLSTQKNAK QEDSRPQNRN NLNSGYSDFT FQPESRTVSA DQQQPWNSGS RPSEQKKDGI  180
SYEQGTGEIV NYQQTQTQSM REARRSDDGY NWRKYGQKQV KSSENPRSYY KCTFPGCPTK  240
KKVERSLDGE ITEIVYKGSH NHPKPKSTRR LSSNSFLPIS AQPMHQIDGD VPERSFGSQV  300
APNQSDQSAA TPENSSASVD DDDRSRVGGD ELDEDEPDAK RWKMETGGEM MSATGCRAVQ  360
EPRVVVQTTS DIDILDDGYR WRKYGQKVVK GNPNPRSYYK CTSQGCTVRK HVERASHDLR  420
AVITTYEGKH NHDVPAARGS GSHGRHQQKH GCHDNFQRLI HN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A1e-36197436878Probable WRKY transcription factor 4
2lex_A1e-36197436878Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription repressor (By similarity). Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. Negative regulator of both gibberellic acid (GA) and abscisic acid (ABA) signaling in aleurone cells, probably by interfering with GAM1, via the specific repression of GA- and ABA-induced promoters (By similarity). {ECO:0000250|UniProtKB:Q6IEQ7, ECO:0000250|UniProtKB:Q6QHD1}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by abscisic acid (ABA) in aleurone cells, embryos, roots and leaves (PubMed:25110688). Slightly down-regulated by gibberellic acid (GA) (By similarity). Accumulates in response to jasmonic acid (MeJA) (PubMed:16919842). {ECO:0000250|UniProtKB:Q6IEQ7, ECO:0000269|PubMed:16919842, ECO:0000269|PubMed:25110688}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028768938.11e-159WRKY transcription factor WRKY24-like
SwissprotQ6B6R41e-124WRK24_ORYSI; WRKY transcription factor WRKY24
TrEMBLA0A1U8LGD91e-160A0A1U8LGD9_GOSHI; probable WRKY transcription factor 25
STRINGEOY346311e-154(Theobroma cacao)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G38470.12e-97WRKY DNA-binding protein 33
Publications ? help Back to Top
  1. Basu S,Roychoudhury A
    Expression profiling of abiotic stress-inducible genes in response to multiple stresses in rice (Oryza sativa L.) varieties with contrasting level of stress tolerance.
    Biomed Res Int, 2014. 2014: p. 706890
    [PMID:25110688]