PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Kalax.0136s0116.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
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Family | WRKY | ||||||||
Protein Properties | Length: 464aa MW: 51164.1 Da PI: 7.9018 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 104.3 | 6.4e-33 | 208 | 265 | 2 | 60 |
--SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 dDgynWrKYGqK+vk+se+prsYY+Ct++gCp+kkkvers d++++ei+Y+g+Hnh+k Kalax.0136s0116.1.p 208 DDGYNWRKYGQKQVKSSENPRSYYKCTFPGCPTKKKVERSL-DGEITEIVYKGSHNHPK 265 8****************************************.***************85 PP | |||||||
2 | WRKY | 104.8 | 4.8e-33 | 376 | 434 | 1 | 59 |
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 ldDgy+WrKYGqK+vkg+++prsYY+Cts+gC+v+k+ver+++d ++v++tYeg+Hnh+ Kalax.0136s0116.1.p 376 LDDGYRWRKYGQKVVKGNPNPRSYYKCTSQGCTVRKHVERASHDLRAVITTYEGKHNHD 434 59********************************************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 4.2E-29 | 194 | 266 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 1.57E-25 | 201 | 266 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 23.87 | 202 | 266 | IPR003657 | WRKY domain |
SMART | SM00774 | 6.1E-36 | 207 | 265 | IPR003657 | WRKY domain |
Pfam | PF03106 | 3.1E-25 | 208 | 264 | IPR003657 | WRKY domain |
Gene3D | G3DSA:2.20.25.80 | 4.6E-37 | 361 | 436 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 3.66E-29 | 368 | 436 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 38.871 | 371 | 436 | IPR003657 | WRKY domain |
SMART | SM00774 | 1.4E-38 | 376 | 435 | IPR003657 | WRKY domain |
Pfam | PF03106 | 2.8E-25 | 377 | 434 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 464 aa Download sequence Send to blast |
MAAASGSLDT SANSPFSFST SFMNSSFSDL LNFPAAVTVE DDSSLLLNGS VNRGVPKFKS 60 LHPPSLLPVS PPPTSPSSYF AFPPGLSPSD LLDSPVLLSS SDLLQSPTTG SFPAALSYRW 120 GTLSTQKNAK QEDSRPQNRN NLNSGYSDFT FQPESRTVSA QDQQQPWNSG SRPSEQKKDG 180 ISYEQGTGEI VNYQQTQTQS MREARRSDDG YNWRKYGQKQ VKSSENPRSY YKCTFPGCPT 240 KKKVERSLDG EITEIVYKGS HNHPKPKSTR RLSSNSFLPI SAQPMHQIDG DVPERSFGSQ 300 VAPNQSDQSA ATPENSSASV DDDDRSRVGG DELDEDEPDA KRWKMETGGE MMSATGCRAV 360 QEPRVVVQTT SDIDILDDGY RWRKYGQKVV KGNPNPRSYY KCTSQGCTVR KHVERASHDL 420 RAVITTYEGK HNHDVPAARG SGSHGRHQQK HGCHDNFQRL IHN* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wj2_A | 1e-36 | 198 | 437 | 8 | 78 | Probable WRKY transcription factor 4 |
2lex_A | 1e-36 | 198 | 437 | 8 | 78 | Probable WRKY transcription factor 4 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription repressor (By similarity). Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. Negative regulator of both gibberellic acid (GA) and abscisic acid (ABA) signaling in aleurone cells, probably by interfering with GAM1, via the specific repression of GA- and ABA-induced promoters (By similarity). {ECO:0000250|UniProtKB:Q6IEQ7, ECO:0000250|UniProtKB:Q6QHD1}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by abscisic acid (ABA) in aleurone cells, embryos, roots and leaves (PubMed:25110688). Slightly down-regulated by gibberellic acid (GA) (By similarity). Accumulates in response to jasmonic acid (MeJA) (PubMed:16919842). {ECO:0000250|UniProtKB:Q6IEQ7, ECO:0000269|PubMed:16919842, ECO:0000269|PubMed:25110688}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_028768938.1 | 1e-159 | WRKY transcription factor WRKY24-like | ||||
Swissprot | Q6B6R4 | 1e-126 | WRK24_ORYSI; WRKY transcription factor WRKY24 | ||||
TrEMBL | A0A1U8LGD9 | 1e-160 | A0A1U8LGD9_GOSHI; probable WRKY transcription factor 25 | ||||
TrEMBL | A0A2P5Q929 | 1e-160 | A0A2P5Q929_GOSBA; Uncharacterized protein | ||||
STRING | EOY34631 | 1e-153 | (Theobroma cacao) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G38470.1 | 2e-97 | WRKY DNA-binding protein 33 |
Link Out ? help Back to Top | |
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Phytozome | Kalax.0136s0116.1.p |
Publications ? help Back to Top | |||
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