PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0134s0032.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family AP2
Protein Properties Length: 493aa    MW: 53430.6 Da    PI: 7.8221
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0134s0032.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP254.13.8e-17167216155
                  AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                          s+y+GV++++++grW+++I+d      + k+++lg f+ta  Aa+a+++a+ k++g
  Kalax.0134s0032.1.p 167 SQYRGVTFYRRTGRWESHIWD------CgKQVYLGGFDTAHAAARAYDRAAIKFRG 216
                          78*******************......55************************998 PP
2AP242.12.2e-13259309155
                  AP2   1 sgykGVrwdkkrgrWvAeIrdpseng...krkrfslgkfgtaeeAakaaiaarkkleg 55 
                          s+y+GV+ +k  grW+A+       g    +k+++lg f+t+ eAa+a++ a+++ +g
  Kalax.0134s0032.1.p 259 SKYRGVTLHK-CGRWEAR---M---GqllGKKYIYLGLFDTEVEAARAYDVAALRCNG 309
                          89********.7******...5...334336**********99**********99766 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541717.85E-16167225IPR016177DNA-binding domain
PfamPF008472.8E-9167216IPR001471AP2/ERF domain
PROSITE profilePS5103217.846168224IPR001471AP2/ERF domain
CDDcd000181.11E-11168226No hitNo description
SMARTSM003806.1E-32168230IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.6E-17168224IPR001471AP2/ERF domain
CDDcd000189.47E-26259319No hitNo description
PfamPF008473.7E-9259309IPR001471AP2/ERF domain
SuperFamilySSF541718.5E-17259318IPR016177DNA-binding domain
PROSITE profilePS5103215.857260317IPR001471AP2/ERF domain
SMARTSM003803.4E-32260323IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.9E-16260317IPR001471AP2/ERF domain
PRINTSPR003676.6E-6261272IPR001471AP2/ERF domain
PRINTSPR003676.6E-6299319IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 493 aa     Download sequence    Send to blast
MWDLNAEMLT DDAPQAQRNV NHQTAERRAR AGPMMDDAGT STSSIIVNAA AAGDEDSNSS  60
NAARTFTFDI IMNSNTSPHH HQQDNIIASS SSSAAANARV FYSAAPNFGD GGVGSRSSSS  120
ATSPKSDWLN LSFADSAEQS EMRLLQQQQQ QQMPVKKSRR GPRSRSSQYR GVTFYRRTGR  180
WESHIWDCGK QVYLGGFDTA HAAARAYDRA AIKFRGSDAD INFNIADYQE DINQMKSLSK  240
EEFVHILRRQ STGFARGSSK YRGVTLHKCG RWEARMGQLL GKKYIYLGLF DTEVEAARAY  300
DVAALRCNGS EAATNFEPST YEGDVASHPN NDASGHELDL SLTIDSSSDY NPKLNESSSH  360
DGNFKGGGPK LVYPTYATGG GQVPSAHSQP SMPASYPTMS HGLAVHSGGY LPMSYEVMER  420
SVAAVASPRM PNWGWQHSQG HGGTISRLPP FSSAASSGFS LSSSVTPATS LASLQLQQPH  480
QSSGYQNNYR KS*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor (By similarity). Involved in spikelet transition. Together with SNB, controls synergistically inflorescence architecture and floral meristem establishment via the regulation of spatio-temporal expression of B- and E-function floral organ identity genes in the lodicules and of spikelet meristem genes. Prevents lemma and palea elongation as well as grain growth (By similarity). {ECO:0000250|UniProtKB:P47927, ECO:0000250|UniProtKB:Q84TB5}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002312046.11e-125floral homeotic protein APETALA 2 isoform X1
RefseqXP_024463449.11e-125floral homeotic protein APETALA 2 isoform X2
SwissprotB8AMA94e-98AP22_ORYSI; APETALA2-like protein 2
TrEMBLA0A2K1ZBQ11e-124A0A2K1ZBQ1_POPTR; Uncharacterized protein
TrEMBLB9HLZ71e-124B9HLZ7_POPTR; Uncharacterized protein
STRINGPOPTR_0008s04490.11e-124(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28550.38e-92related to AP2.7