PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Kalax.0124s0074.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
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Family | MYB | ||||||||
Protein Properties | Length: 272aa MW: 30076.3 Da PI: 6.5017 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 48.6 | 1.9e-15 | 23 | 70 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+WT eEd l++++ G g+W+ a++ g++Rt+k+c++rw++yl Kalax.0124s0074.1.p 23 RGPWTVEEDTMLIHYISCNGDGRWNMLAKCAGLKRTGKSCRLRWLNYL 70 89********************************************97 PP | |||||||
2 | Myb_DNA-binding | 51.2 | 2.9e-16 | 76 | 119 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rg+ +++E++l++++++++G++ W++Ia++++ gRt++++k++w++ Kalax.0124s0074.1.p 76 RGNLSPQEQLLILELHAKWGNR-WSKIAQHLP-GRTDNEIKNFWRT 119 7899******************.*********.***********96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 14.615 | 18 | 70 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 9.77E-30 | 21 | 117 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 2.3E-12 | 22 | 72 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.1E-13 | 23 | 70 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.9E-21 | 24 | 77 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 7.49E-10 | 25 | 70 | No hit | No description |
PROSITE profile | PS51294 | 24.684 | 71 | 125 | IPR017930 | Myb domain |
SMART | SM00717 | 6.6E-15 | 75 | 123 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.0E-15 | 76 | 119 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.3E-23 | 78 | 124 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 8.93E-12 | 80 | 119 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 272 aa Download sequence Send to blast |
MACKSSSDGK GSMCEEDEAE LRRGPWTVEE DTMLIHYISC NGDGRWNMLA KCAGLKRTGK 60 SCRLRWLNYL KPDVKRGNLS PQEQLLILEL HAKWGNRWSK IAQHLPGRTD NEIKNFWRTR 120 VQKQALQLSL ETPDNQQLIA ASAFSQSNSP ASSSAMSMSP RINWHNTFSC NSVTPTLGEP 180 SSSSLHHQTP TNPSNNVAYG NNVCISSSSP FHHEDCYYVD NSQAADAGGG FGSVDAGVTA 240 TSGYVGRRDL VADDEVENGM WNNTDELWQF R* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gv2_A | 2e-24 | 20 | 125 | 1 | 105 | MYB PROTO-ONCOGENE PROTEIN |
1h8a_C | 3e-24 | 20 | 125 | 24 | 128 | MYB TRANSFORMING PROTEIN |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription repressor of phosphate (Pi) starvation-induced genes. Regulates negatively Pi starvation responses via the repression of gibberellic acid (GA) biosynthesis and signaling. Modulates root architecture, phosphatase activity, and Pi uptake and accumulation. {ECO:0000269|PubMed:19529828}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Slightly induced by salicylic acid (PubMed:16463103). Induced reversibly in response to phosphate (Pi) deficiency but repressed in the presence of Pi, specifically in the leaves. Availability of Pi increases with decreased levels (PubMed:19529828). {ECO:0000269|PubMed:16463103, ECO:0000269|PubMed:19529828}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_019229265.1 | 3e-77 | PREDICTED: transcription factor MYB24-like | ||||
Swissprot | Q9C9G7 | 1e-69 | MYB62_ARATH; Transcription factor MYB62 | ||||
TrEMBL | A0A314KLS4 | 7e-76 | A0A314KLS4_NICAT; Transcription factor myb108 | ||||
STRING | XP_009797951.1 | 6e-76 | (Nicotiana sylvestris) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G68320.1 | 4e-68 | myb domain protein 62 |
Link Out ? help Back to Top | |
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Phytozome | Kalax.0124s0074.1.p |
Publications ? help Back to Top | |||
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