PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Kalax.0124s0008.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
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Family | LBD | ||||||||
Protein Properties | Length: 301aa MW: 33580.4 Da PI: 4.9665 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 124.8 | 4.3e-39 | 10 | 110 | 1 | 101 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleql 90 aCaaCk++rr+C ++C lapyfpa+qpk f+n+h+lFG+sn+lk+lk+l+++++++am+s++y++++r + Pv G++g i++l+ q+++ Kalax.0124s0008.1.p 10 ACAACKYQRRRCLPECQLAPYFPADQPKMFQNAHRLFGVSNILKILKQLDPSQKSEAMRSIIYQSDIRDKYPVAGCFGYIHQLHYQIQRG 99 7***************************************************************************************** PP DUF260 91 kaelallkeel 101 ++el+++++++ Kalax.0124s0008.1.p 100 EEELHAIRSQI 110 *****999875 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 25.369 | 9 | 110 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 4.7E-37 | 10 | 107 | IPR004883 | Lateral organ boundaries, LOB |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009556 | Biological Process | microsporogenesis | ||||
GO:0009786 | Biological Process | regulation of asymmetric cell division | ||||
GO:0005634 | Cellular Component | nucleus |
Sequence ? help Back to Top |
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Protein Sequence Length: 301 aa Download sequence Send to blast |
MTLKGGTSQA CAACKYQRRR CLPECQLAPY FPADQPKMFQ NAHRLFGVSN ILKILKQLDP 60 SQKSEAMRSI IYQSDIRDKY PVAGCFGYIH QLHYQIQRGE EELHAIRSQI ALCKMQQQQQ 120 TMGQNDDDNQ IMQTMQTTGI IGEDEDSTSL LQLGMGPPNN THNNNISSAN NNINNNNTMM 180 FENGGGYVNE QFCWNNNNNL MDFQLAGDVV QQQFAVVVPS SSQEMGAGIN NSSSLVHHFR 240 EMHPFLDAID DRQSFIDSKV AYESSSSEES SDPMKAMDHQ VVESTDLKNA AACFSLTSVN 300 * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 1e-29 | 6 | 110 | 7 | 111 | LOB family transfactor Ramosa2.1 |
5ly0_B | 1e-29 | 6 | 110 | 7 | 111 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_028064604.1 | 5e-84 | LOB domain-containing protein 27-like |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G47870.1 | 1e-49 | LOB domain-containing protein 27 |
Link Out ? help Back to Top | |
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Phytozome | Kalax.0124s0008.1.p |